View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3798_high_4 (Length: 349)
Name: NF3798_high_4
Description: NF3798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3798_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 51773779 - 51773451
Alignment:
| Q |
6 |
agcagcacagatgaggatgtgacattggactctgtgataagactagatgagataaaattagaaattaatgaccatattagaatgagagttggggaagctt |
105 |
Q |
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| T |
51773779 |
agcagcgcagatgaggatgtgacattggactttgtgataagactagatgagataaaattagaaattaatgaccatattagaatgagagttggggaagctt |
51773680 |
T |
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| Q |
106 |
tcacatgaccaatcggtatcaccaccattgtacgcatgcatgcatccctcttttgtttatctttgtattgtatcttatgattaatgattaatttaaggag |
205 |
Q |
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| T |
51773679 |
tcacatgaccaatcggtatcaccaccattgtacgcatgcatgcatccctcttttgtttatctttgtattgtatcttatgattaatgattaatttaaggag |
51773580 |
T |
|
| Q |
206 |
gcaaatgtttttggttaggtttaaaaccagnnnnnnnggtacaaatatggtgttagaattgttagattgactaagttaagccacaatttcaaaattactt |
305 |
Q |
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| T |
51773579 |
gcaaatgtttttggttaggtttaaaaccag-aaaaaaggtacaaatatggtgttagaattgttagattgactaagttaagccacaatttcaaaattactt |
51773481 |
T |
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| Q |
306 |
tacctattgtatgccccattttgttgcaac |
335 |
Q |
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| T |
51773480 |
tacctattgtatgccccattttgttgcaac |
51773451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 48736235 - 48736203
Alignment:
| Q |
38 |
tgtgataagactagatgagataaaattagaaat |
70 |
Q |
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| T |
48736235 |
tgtggtaagactagatgagataaaattagaaat |
48736203 |
T |
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