View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3798_high_5 (Length: 330)
Name: NF3798_high_5
Description: NF3798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3798_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 44377145 - 44377461
Alignment:
| Q |
1 |
cacagccaatttggattgaagtagtatcatataacgctactcacctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatctt |
100 |
Q |
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| T |
44377145 |
cacagccaatttggattgaagtagtatcatataacgctactcacctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatctt |
44377244 |
T |
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| Q |
101 |
gcattgtccatccatcctcaggaaccttttgcgccattgcaaccaatgcattaatcctcacttttaactcttcatagtccctctgtaccaacaagattca |
200 |
Q |
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| T |
44377245 |
gcattgtccatccatcctcaggaaccttttgcgccattgcaaccaatgcattaatcctcacttttaactcttcatagtccctctgtaccaacaagattca |
44377344 |
T |
|
| Q |
201 |
aaacaccacaagcaaatgcaatgaaaccatcatttgttttgagactacagatatgatacaaggcaaaccaataataataattagttcaaaccttaatagc |
300 |
Q |
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| T |
44377345 |
aaacaccacaagcaaatgcaatgaaaccatcatttgttttgagactacagatatgatacaaggcaaaccaataataataattagttcaaaccttaatagc |
44377444 |
T |
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| Q |
301 |
acgacgctccttgatga |
317 |
Q |
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| T |
44377445 |
acgacgctccttgatga |
44377461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 38720620 - 38720769
Alignment:
| Q |
43 |
acctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcattgtccatccatcctcaggaaccttttgcgccattgcaa |
142 |
Q |
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| T |
38720620 |
acctgaatcatgccaggatgatccctcacatcatttccaggccacggagtcccatcctgcatagtccatccatcctcgggaaccttctgtgccgttgcca |
38720719 |
T |
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| Q |
143 |
ccaatgcattaatcctcacttttaactcttcatagtccctctgtaccaac |
192 |
Q |
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| T |
38720720 |
ccaaactattaatcctcaccttaaattcttcataatctctctgtaacaac |
38720769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 13825890 - 13825952
Alignment:
| Q |
43 |
acctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcatt |
105 |
Q |
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| T |
13825890 |
acctggatcattcccggatggtctctgacattatttccaggccacggtgtaccatcttgcatt |
13825952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 49591795 - 49591871
Alignment:
| Q |
43 |
acctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcattgtccatccatcctc |
119 |
Q |
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| T |
49591795 |
acctgaatcattccaggatgatccctgggattatttccaggccaaggagttccatcctgcattgtccaaccttcctc |
49591871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 54383314 - 54383453
Alignment:
| Q |
46 |
tgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcattgtccatccatcct-caggaaccttttgcgccattgcaacc |
144 |
Q |
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| T |
54383314 |
tgaatcataccaggatgatccttagtattgtttcctggccatggtgtcccatcctgcataatcca-ccctcctgcaggaaccttctgagcttttgccaca |
54383412 |
T |
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| Q |
145 |
aatgcattaatcctcacttttaactcttcatagtccctctg |
185 |
Q |
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| T |
54383413 |
agtgcattgatcctaaccttaaactcttcatattctctctg |
54383453 |
T |
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