View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3798_low_2 (Length: 401)

Name: NF3798_low_2
Description: NF3798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3798_low_2
NF3798_low_2
[»] chr1 (4 HSPs)
chr1 (45-385)||(2470964-2471304)
chr1 (85-120)||(3921675-3921710)
chr1 (85-120)||(11571593-11571628)
chr1 (85-119)||(40747790-40747824)
[»] chr2 (3 HSPs)
chr2 (85-132)||(18570980-18571030)
chr2 (85-119)||(40681990-40682024)
chr2 (85-118)||(30563417-30563450)
[»] chr8 (4 HSPs)
chr8 (85-120)||(29198495-29198530)
chr8 (85-119)||(34201063-34201097)
chr8 (87-135)||(7616849-7616898)
chr8 (87-119)||(10441213-10441245)
[»] chr7 (3 HSPs)
chr7 (85-120)||(38134422-38134457)
chr7 (85-120)||(44172906-44172941)
chr7 (86-120)||(30516373-30516407)
[»] chr5 (4 HSPs)
chr5 (85-120)||(11596471-11596506)
chr5 (85-117)||(28296336-28296368)
chr5 (83-119)||(30098332-30098368)
chr5 (88-120)||(43208290-43208322)
[»] chr4 (6 HSPs)
chr4 (85-120)||(5654607-5654642)
chr4 (85-120)||(10546156-10546191)
chr4 (85-120)||(18513257-18513292)
chr4 (82-118)||(12077833-12077869)
chr4 (87-119)||(26276026-26276058)
chr4 (85-121)||(38178618-38178654)
[»] chr3 (1 HSPs)
chr3 (85-120)||(40150587-40150622)
[»] scaffold0037 (1 HSPs)
scaffold0037 (85-119)||(102913-102947)
[»] chr6 (5 HSPs)
chr6 (85-119)||(6299520-6299554)
chr6 (85-119)||(6306330-6306364)
chr6 (87-132)||(9024177-9024225)
chr6 (85-118)||(2140499-2140532)
chr6 (88-120)||(10157995-10158027)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 45 - 385
Target Start/End: Complemental strand, 2471304 - 2470964
Alignment:
Q  45 actgatacaaacacgacatgaacactacaccgtcacatgttaataatttgagaaaatgagataattcaatgtaatctgtgtcagtgtcagaattcacata 144  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2471304 actgatacaaacacgacatgaacactacacctacacatgttaataatttgagaaaatgagataattcaatgtaatctgtgtcagcgtcagaattcacata 2471205  T
Q  145 ctttagatcagaattgtcggtgctagaaagatttgtacaactccatttcataatctatgatgcttgtgaaatccaatgtatgattatttttggagtaaag 244  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2471204 ctttagatcagaattgtcggtgctagaaagatttgtgcaactccatttcataatctatgatgcttatgaaatccaatgtatgattatttttggagtaaag 2471105  T
Q  245 ttgagtttgaagaaatcaagtggtaccgtgattttgttgaagtttttgctacaatcacggtgacacattgcgattctagcaaactcactgcaaatccaat 344  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471104 ttgagtttgaagaaatcaagtggtaccgtgattttgttgaaatttttgctacaatcacggtgacacattgcgattctagcaaactcactgcaaatccaat 2471005  T
Q  345 catgcagtttgtggattaaataggggtgtaataaccttgtg 385  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2471004 catgcagtttgtggattaaataggggtgtaataaccttgtg 2470964  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 3921675 - 3921710
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3921675 taataatttgagaaaatgacataattcaatgtaatc 3921710  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 11571593 - 11571628
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11571593 taataatttgagaaaatgacataattcaatgtaatc 11571628  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 40747824 - 40747790
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| |||||||||||||||    
T  40747824 taataatttgagaaaatgacataattcaatgtaat 40747790  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 18570980 - 18571030
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc---tgtgtcagtgtc 132  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  18570980 taataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc 18571030  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 40681990 - 40682024
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| |||||||||||||||    
T  40681990 taataatttgagaaaatgacataattcaatgtaat 40682024  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 30563417 - 30563450
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaa 118  Q
    ||||||||||||||||||| ||||||||||||||    
T  30563417 taataatttgagaaaatgacataattcaatgtaa 30563450  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 29198530 - 29198495
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatc 29198495  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 34201097 - 34201063
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| |||||||||||||||    
T  34201097 taataatttgagaaaatgacataattcaatgtaat 34201063  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 7616898 - 7616849
Alignment:
Q  87 ataatttgagaaaatgagataattcaatgtaatc-tgtgtcagtgtcaga 135  Q
    ||||||||||||||||| | |||||||||||||| || ||||||||||||    
T  7616898 ataatttgagaaaatgacacaattcaatgtaatcatgagtcagtgtcaga 7616849  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 10441213 - 10441245
Alignment:
Q  87 ataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||| |||||||||||||||    
T  10441213 ataatttgagaaaatgacataattcaatgtaat 10441245  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 38134457 - 38134422
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  38134457 taataatttgagaaaatgacataattcaatgtaatc 38134422  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 44172941 - 44172906
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44172941 taataatttgagaaaatgacataattcaatgtaatc 44172906  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 30516407 - 30516373
Alignment:
Q  86 aataatttgagaaaatgagataattcaatgtaatc 120  Q
    |||||||||||||||||| ||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaatc 30516373  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 11596506 - 11596471
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11596506 taataatttgagaaaatgacataattcaatgtaatc 11596471  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 28296336 - 28296368
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgta 117  Q
    ||||||||||||||||||| |||||||||||||    
T  28296336 taataatttgagaaaatgacataattcaatgta 28296368  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 30098332 - 30098368
Alignment:
Q  83 gttaataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| | |||||||||||||||    
T  30098332 gttaataatttgagaaaatcacataattcaatgtaat 30098368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 43208322 - 43208290
Alignment:
Q  88 taatttgagaaaatgagataattcaatgtaatc 120  Q
    |||||||||||||||| ||||||||||||||||    
T  43208322 taatttgagaaaatgacataattcaatgtaatc 43208290  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 5654642 - 5654607
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5654642 taataatttgagaaaatgacataattcaatgtaatc 5654607  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 10546156 - 10546191
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10546156 taataatttgagaaaatgacataattcaatgtaatc 10546191  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 18513292 - 18513257
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18513292 taataatttgagaaaatgacataattcaatgtaatc 18513257  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 12077833 - 12077869
Alignment:
Q  82 tgttaataatttgagaaaatgagataattcaatgtaa 118  Q
    |||||||||||||||||||| | ||||||||||||||    
T  12077833 tgttaataatttgagaaaatcacataattcaatgtaa 12077869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 26276058 - 26276026
Alignment:
Q  87 ataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||| |||||||||||||||    
T  26276058 ataatttgagaaaatgacataattcaatgtaat 26276026  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 38178654 - 38178618
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatct 121  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  38178654 taatactttgagaaaatgatataattcaatgtaatct 38178618  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 40150622 - 40150587
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaatc 120  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40150622 taataatttgagaaaatgatataattcaatgtaatc 40150587  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 102913 - 102947
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| |||||||||||||||    
T  102913 taataatttgagaaaatgatataattcaatgtaat 102947  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 6299520 - 6299554
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| |||||||||||||||    
T  6299520 taataatttgagaaaatgatataattcaatgtaat 6299554  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 6306330 - 6306364
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaat 119  Q
    ||||||||||||||||||| |||||||||||||||    
T  6306330 taataatttgagaaaatgatataattcaatgtaat 6306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 9024225 - 9024177
Alignment:
Q  87 ataatttgagaaaatgagataattcaatgtaatc---tgtgtcagtgtc 132  Q
    ||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc 9024177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 2140532 - 2140499
Alignment:
Q  85 taataatttgagaaaatgagataattcaatgtaa 118  Q
    ||||||||||||||||||| ||||||||||||||    
T  2140532 taataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 10157995 - 10158027
Alignment:
Q  88 taatttgagaaaatgagataattcaatgtaatc 120  Q
    |||||||||||||||| ||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatc 10158027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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