View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3798_low_3 (Length: 389)
Name: NF3798_low_3
Description: NF3798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3798_low_3 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 3877796 - 3878164
Alignment:
| Q |
16 |
atttttatgaaagttgtcatggtagaaaattcaataaccaatttttgtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatg |
115 |
Q |
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| T |
3877796 |
atttttatgaaagttgtcatggtagaaaattcaataaccaatttt-gtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatg |
3877894 |
T |
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| Q |
116 |
gttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtga |
215 |
Q |
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| T |
3877895 |
gttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtga |
3877994 |
T |
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| Q |
216 |
agaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctttgacaccttggttctaaa |
315 |
Q |
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| T |
3877995 |
agaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctttgacaccttggttctaaa |
3878094 |
T |
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| Q |
316 |
agttgaaaataggtccaagctgtagtgatannnnnnnatttagtcttgatttgtcacaattcctatgcta |
385 |
Q |
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| T |
3878095 |
agttgaaaataggtccaagctgtagtgatatttttttatttagtcttgatttgtcacaattcctatgcta |
3878164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 8634 - 9000
Alignment:
| Q |
18 |
ttttatgaaagttgtcatggtagaaaattcaataaccaatttttgtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatggt |
117 |
Q |
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| T |
8634 |
ttttatgaaagttgtcatggtagaaaattcaataaccaatttt-gtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatggt |
8732 |
T |
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| Q |
118 |
tatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtgaag |
217 |
Q |
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| T |
8733 |
tatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtgaag |
8832 |
T |
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| Q |
218 |
aagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctttgacaccttggttctaaaag |
317 |
Q |
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| T |
8833 |
aagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctttgacaccttggttctaaaag |
8932 |
T |
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| Q |
318 |
ttgaaaataggtccaagctgtagtgatannnnnnnatttagtcttgatttgtcacaattcctatgcta |
385 |
Q |
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| T |
8933 |
ttgaaaataggtccaagctgtagtgatatttttttatttagtcttgatttgtcacaattcctatgcta |
9000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 300
Target Start/End: Complemental strand, 25918268 - 25918066
Alignment:
| Q |
98 |
attttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtg |
197 |
Q |
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|||||||||||||||||||| ||||||| || || |||||||| |||||| ||||||||||||||||||| |||| |||| || | |||||||||| |
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| T |
25918268 |
attttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataatatcaatgggtg |
25918169 |
T |
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| Q |
198 |
gcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctt |
297 |
Q |
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| || || |||||||||||||||||| || ||||||||| || || ||| | ||||| || ||||| ||||||||| | ||||| ||||||||||| |
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| T |
25918168 |
gtataaacaaagaagtgaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttccttaaagtctt |
25918069 |
T |
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| Q |
298 |
tga |
300 |
Q |
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||| |
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| T |
25918068 |
tga |
25918066 |
T |
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