View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3798_low_8 (Length: 205)
Name: NF3798_low_8
Description: NF3798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3798_low_8 |
 | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0111 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 46730 - 46558
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46730 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagaagaccttgcgagatattgctagtgcggttggca |
46631 |
T |
|
| Q |
115 |
cgccgctagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtattttagtcgacataga |
187 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630 |
cgccgcaagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtattttagtcgacataga |
46558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 21493290 - 21493118
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggca |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21493290 |
cagagaaacacacatgcgtaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagagattgctagtgcggttggca |
21493191 |
T |
|
| Q |
115 |
cgccgctagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtattttagtcgacataga |
187 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21493190 |
cgccgcaagtccttgacaatgcgactttgaaacgtctttttggacattatgcccgtattttagtcgacataga |
21493118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 33066336 - 33066176
Alignment:
| Q |
24 |
acacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggcacgccgctag |
123 |
Q |
| |
|
|||||| |||||||| |||| ||| | ||||||||||||||||||||||||||||| | || | || || |||||||||| ||||||||||||||| | |
|
|
| T |
33066336 |
acacatacgcaagtacggattcgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcacgccgctcg |
33066237 |
T |
|
| Q |
124 |
tccttgacaatgcgactttgaaacgtctttttggacactatgcccgtattttagtcgacat |
184 |
Q |
| |
|
| |||||||||| || ||| || | ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33066236 |
ttgttgacaatgcaaccttgtaaagactttttggacactatgcacgtatattagtcgacat |
33066176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 27176026 - 27176120
Alignment:
| Q |
21 |
aacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggcac |
115 |
Q |
| |
|
|||||||| || ||||| ||||| || ||| | | |||||||||||| ||||||||||||||||| | || || ||||| |||||||| ||||| |
|
|
| T |
27176026 |
aacacacacgcacaagtgtggattcgtcttcttgaactgccacaagagtattggatggagcagacgcttcgtgagattgcaagtgcggtgggcac |
27176120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 27186397 - 27186461
Alignment:
| Q |
21 |
aacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagac |
85 |
Q |
| |
|
|||||||| || ||||| ||||| || ||| | | |||||||||||| ||||||||||||||||| |
|
|
| T |
27186397 |
aacacacacgcacaagtgtggattcgtcttcttgaactgccacaagagtattggatggagcagac |
27186461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 38501374 - 38501217
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggca |
114 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
|
|
| T |
38501374 |
cagaggaacacccatgcgcaggtatggatccgattgatggcattgccacaagaatattggatggagcagactctacgtgaaattgctagtgcggttggca |
38501275 |
T |
|
| Q |
115 |
cgccgctagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtat |
172 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| | ||||||||||||||||||||||| |
|
|
| T |
38501274 |
cgccgctagttcttgacaatgcaacactgaaaagactttttggacactatgcccgtat |
38501217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 9283219 - 9283370
Alignment:
| Q |
33 |
caagtatggatccgacttatggcactgccacaagaatattggatggagcagac-cttgcgagatattgctagtgcggttggcacgccgctagtccttgac |
131 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||||||| ||| | | || || || || ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
9283219 |
caagtatggatccgattgatggcactgccacaacaatattgaatgaaacgtactctatcg-gaaattgccagtgcggttggcacgccactagttcttgac |
9283317 |
T |
|
| Q |
132 |
aatgcgactttgaaacgtctttttggacactatgcccgtattttagtcgacat |
184 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
9283318 |
aatgcgacattgaaaagactttttggacactatgcatgtatcttagtcgacat |
9283370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 20380889 - 20381046
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggca |
114 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| | || || ||| ||||||||||||||| |
|
|
| T |
20380889 |
cagaggaacacccatgcgcaggtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaatttctagtgcggttggca |
20380988 |
T |
|
| Q |
115 |
cgccgctagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtat |
172 |
Q |
| |
|
|||||||||| ||||||||||| || | ||| | ||||||||||||||||||||||| |
|
|
| T |
20380989 |
cgccgctagttcttgacaatgcaacactaaaaagactttttggacactatgcccgtat |
20381046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 29041684 - 29041835
Alignment:
| Q |
21 |
aacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggcacgccgc |
120 |
Q |
| |
|
||||| |||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||| | || || ||||||||||||||||||||||||| |
|
|
| T |
29041684 |
aacactcatgtgcaagtatggatccgattgatggcactgccacaagaatatcagatggagcagactctacgtgaaattgctagtgcggttggcacgccgc |
29041783 |
T |
|
| Q |
121 |
tagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtat |
172 |
Q |
| |
|
|||| ||||||||||| || ||||| | ||||||||||||||||||||||| |
|
|
| T |
29041784 |
tagttcttgacaatgcaacactgaaaagactttttggacactatgcccgtat |
29041835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 20950870 - 20951021
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggca |
114 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||| |
|
|
| T |
20950870 |
cagaggaacacccatgtgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctagtgtggttggca |
20950969 |
T |
|
| Q |
115 |
cgccgctagtccttgacaatgcgactttgaaacgtctttttggacactatgc |
166 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| | ||||||||||||||||| |
|
|
| T |
20950970 |
cgccgctagttcttgacaatgcaacactgaaaagactttttggacactatgc |
20951021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 10288663 - 10288599
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatgga |
79 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
10288663 |
cagagaaatacacatgcgcaagtatggatccgattgatggcactgccacaagaatattggatgga |
10288599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 10304379 - 10304315
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatgga |
79 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
10304379 |
cagagaaatacacatgcgcaagtatggatccgattcatggcactgccacaagaatattggatgga |
10304315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 4906 - 4749
Alignment:
| Q |
15 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggca |
114 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
|
|
| T |
4906 |
cagaggaacacccatgcacaagtatggatccaattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctagtgcggttggca |
4807 |
T |
|
| Q |
115 |
cgccgctagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtat |
172 |
Q |
| |
|
|||||||||| ||||||||||| || | ||| | ||||||||||||||||| ||||| |
|
|
| T |
4806 |
cgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgctcgtat |
4749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 27504709 - 27504787
Alignment:
| Q |
52 |
tggcactgccacaagaatattggatggagcagaccttgcgagatattgctagtgcggttggcacgccgctagtccttga |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || | || || || || |||||||||||||||||||||||| |||| |
|
|
| T |
27504709 |
tggcactgccgcaagaatattggatggaacatacacttcgggaaatcgcaagtgcggttggcacgccgctagtcattga |
27504787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University