View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3799_high_11 (Length: 239)

Name: NF3799_high_11
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3799_high_11
NF3799_high_11
[»] chr3 (17 HSPs)
chr3 (18-239)||(27910983-27911204)
chr3 (30-239)||(28080869-28081075)
chr3 (18-239)||(28000020-28000241)
chr3 (30-239)||(28179023-28179232)
chr3 (30-239)||(11409950-11410159)
chr3 (30-211)||(28049158-28049339)
chr3 (18-239)||(27972783-27973001)
chr3 (18-239)||(27462967-27463185)
chr3 (105-239)||(28471189-28471323)
chr3 (105-239)||(28512235-28512369)
chr3 (137-239)||(17747610-17747709)
chr3 (137-239)||(19048930-19049029)
chr3 (186-239)||(18029697-18029750)
chr3 (118-239)||(26211318-26211439)
chr3 (62-127)||(27434099-27434164)
chr3 (118-162)||(26181613-26181657)
chr3 (203-239)||(28491328-28491364)
[»] scaffold0067 (1 HSPs)
scaffold0067 (63-239)||(24550-24726)
[»] scaffold0043 (1 HSPs)
scaffold0043 (182-239)||(70977-71031)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27911204 - 27910983
Alignment:
Q  18 agacattgaccaagttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccag 117  Q
    ||||||||  |||||||||||||||| |||||||||||||  | ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||     
T  27911204 agacattggtcaagttattgccaccagtgttgtcatgatcatcaatgtctattataatgtgcttcaattcgtcacacttactaattgtcaaagtctccaa 27911105  T
Q  118 caacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtatt 217  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||    
T  27911104 caacattcctggagcaatcgataggatgaatactgatttcatcttcgaaatattcttcagtgtaatctctttaatattgcataagatatgtgattgtctt 27911005  T
Q  218 gaaagacattgagcacgttccc 239  Q
    |||||||||||| |||||||||    
T  27911004 gaaagacattgaacacgttccc 27910983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 28081075 - 28080869
Alignment:
Q  30 agttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccagcaacattcttcg 129  Q
    |||||||||||||| ||||   ||||| |||  |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |    
T  28081075 agttattgccaccagtgtt---atgatatcctgtgtctattataatgtgcttcaattcatcacacttactgattgtcaaagtctccaacaacattcttgg 28080979  T
Q  130 agcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtattgaaagacattga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  28080978 agcaatggataggatgaatactgatttcatcttcgaaatattcatcagtgtaatctctttaatattccacaagatatttgatggtattgaaagaaattga 28080879  T
Q  230 gcacgttccc 239  Q
    ||||||||||    
T  28080878 gcacgttccc 28080869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 28000241 - 28000020
Alignment:
Q  18 agacattgaccaagttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccag 117  Q
    |||||| ||||||||||||| ||||| |||||| ||||||  | | ||||||||| || |||||||| |||||||||||||| |||||||| |  ||||     
T  28000241 agacatagaccaagttattggcaccagtgttgttatgatcatcaacgtctattataatatgcttcaattcatcacacttactaattgtcaatgattccaa 28000142  T
Q  118 caacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtatt 217  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  28000141 caacattcttggagcaatagataggatgaatactgatttcatcttcgaaatattattcagtgtaatctctttaatattgcacaagatatgtgatggtatt 28000042  T
Q  218 gaaagacattgagcacgttccc 239  Q
    ||||||||||||||||||||||    
T  28000041 gaaagacattgagcacgttccc 28000020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 28179232 - 28179023
Alignment:
Q  30 agttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccagcaacattcttcg 129  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||  ||||||||| | ||||| ||||||| || |    
T  28179232 agttattgccaccagtgttgtcatgatctcccatgtctattataatgtgcttcaattcattacacttatagattgtcaatgactccaacaacattgttgg 28179133  T
Q  130 agcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtattgaaagacattga 229  Q
    |||||| || ||||| ||||||||||||||||| ||||| |||   ||| |||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  28179132 agcaatagacaggataaatactgatttcatctttgaaattttccagagtgtaatctttttaatattgcacaagatatgtgattgtcttgaaagacattga 28179033  T
Q  230 gcacgttccc 239  Q
    |||| |||||    
T  28179032 gcactttccc 28179023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 11410159 - 11409950
Alignment:
Q  30 agttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccagcaacattcttcg 129  Q
    |||||||| |||||  |||||||||||||||  ||||||| || |||||||| || |||||||| || || ||||||||||| |||| ||||||| || |    
T  11410159 agttattggcaccagagttgtcatgatctccggtgtctataataatgtgctttaattcatcacagttcctaattgtcaaagtttccaacaacatttttgg 11410060  T
Q  130 agcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtattgaaagacattga 229  Q
    |||||| |||||||||||||| ||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  11410059 agcaatagataggatgaataccgatctcatcttcaaaatattcctcagtgtaatctctttaatattgcacaagatatctgatggtcttaaaagacattga 11409960  T
Q  230 gcacgttccc 239  Q
    ||||||||||    
T  11409959 gcacgttccc 11409950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 28049339 - 28049158
Alignment:
Q  30 agttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccagcaacattcttcg 129  Q
    ||||| || ||||| |||||||||||||  | ||||||||||| ||||||||||| ||||||||||| || ||| |||| ||||||| |||||||||       
T  28049339 agttaatggcaccagtgttgtcatgatcatcaatgtctattattatgtgcttcaattcatcacacttgctaattctcaaggtctccaacaacattctaga 28049240  T
Q  130 agcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgat 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28049239 agcaatagataggatgaatactgatttcatcttcgaaatattcttcagtgtaatctctttaatattgcacaagatatgtgat 28049158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27973001 - 27972783
Alignment:
Q  18 agacattgaccaagttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccag 117  Q
    ||||||||  |||||||||||||   ||||||||||||||  |  |||||||||| |||| ||| || |||||||| ||  | ||    ||||||||||     
T  27973001 agacattgcacaagttattgcca---ttgttgtcatgatcatcagtgtctattattatgtactttaattcatcacaattgataatccataaagtctccaa 27972905  T
Q  118 caacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtatt 217  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||||||||||   ||| | |||||||||||||||||||||||||||||||| || ||    
T  27972904 caacattcttggagcaatagataggatgaatacggatttcatcttcgaaatatctctcaatttaatctctttaatattgcacaagatatgtgattgtctt 27972805  T
Q  218 gaaagacattgagcacgttccc 239  Q
    ||||||||||||||||||||||    
T  27972804 gaaagacattgagcacgttccc 27972783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 27462967 - 27463185
Alignment:
Q  18 agacattgaccaagttattgccaccattgttgtcatgatctcccatgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccag 117  Q
    |||||||| ||||||||||||||||| |||   |||  |||||  |||||| ||| ||||||||||| |||||||| || || ||    ||||||||||     
T  27462967 agacattgcccaagttattgccaccactgt---cattttctcctgtgtctactattatgtgcttcaattcatcacagttgctaatacataaagtctccaa 27463063  T
Q  118 caacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtatt 217  Q
    |||||||||| ||||| | |||||||| ||||| ||||||||||| |||||||    ||| |||||||||||||||||| ||| |||||||||| || ||    
T  27463064 caacattcttggagcagtagataggataaatacagatttcatctttgaaatatatcccagcctaatctctttaatattgtacaggatatgtgattgtctt 27463163  T
Q  218 gaaagacattgagcacgttccc 239  Q
    ||||||||||||||||||||||    
T  27463164 gaaagacattgagcacgttccc 27463185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 28471189 - 28471323
Alignment:
Q  105 tcaaagtctccagcaacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagat 204  Q
    ||||||| ||||  ||||||||| ||||| | |||||| | ||||  ||||||||||| || | |||  ||| | |||||||| ||| ||||||||||||    
T  28471189 tcaaagtttccaataacattcttggagcagtagataggttaaataacgatttcatctttgagacattgctcaatgtaatctctgtaacattgcacaagat 28471288  T
Q  205 atgtgatggtattgaaagacattgagcacgttccc 239  Q
    ||||||| || ||||||||||||||||||||||||    
T  28471289 atgtgattgtcttgaaagacattgagcacgttccc 28471323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 28512235 - 28512369
Alignment:
Q  105 tcaaagtctccagcaacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagat 204  Q
    ||||||| ||||  ||||||||| ||||| | |||||| | ||||  ||||||||||| || | |||  ||| | |||||||| ||| ||||||||||||    
T  28512235 tcaaagtttccaataacattcttggagcagtagataggttaaataacgatttcatctttgagacattgctcaatgtaatctctgtaacattgcacaagat 28512334  T
Q  205 atgtgatggtattgaaagacattgagcacgttccc 239  Q
    ||||||| || ||||||||||||||||||||||||    
T  28512335 atgtgattgtcttgaaagacattgagcacgttccc 28512369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 17747610 - 17747709
Alignment:
Q  137 gataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtattgaaagacattgagcacgtt 236  Q
    |||||||| ||||| ||||||||||| |||| |||||||| | ||||||||| || |||||||||||   ||| |||| |||||||||||||||||||||    
T  17747610 gataggataaataccgatttcatctttgaaacattcttcaatgtaatctcttcaacattgcacaaga---gtgctggtcttgaaagacattgagcacgtt 17747706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 19048930 - 19049029
Alignment:
Q  137 gataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtattgaaagacattgagcacgtt 236  Q
    |||||||| ||||| ||||||||||| |||| |||||||| | ||||||||| || |||||||||||   ||| |||| |||||||||||||||||||||    
T  19048930 gataggataaataccgatttcatctttgaaacattcttcaatgtaatctcttcaacattgcacaaga---gtgctggtcttgaaagacattgagcacgtt 19049026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 18029697 - 18029750
Alignment:
Q  186 ctttaatattgcacaagatatgtgatggtattgaaagacattgagcacgttccc 239  Q
    ||||||| ||||||| |||||||||| || ||||||||||||||||||||||||    
T  18029697 ctttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttccc 18029750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 26211318 - 26211439
Alignment:
Q  118 caacattcttcgagcaatggataggatgaatactgatttcatcttcgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtatt 217  Q
    |||||||||| ||||||| ||| |||| ||||| ||||| ||||||| || |||    | |  |||||||||| ||||||||| |||||||||| || ||    
T  26211318 caacattcttggagcaatagattggataaatacagatttaatcttcggaaaattacagatttcaatctctttagtattgcacaggatatgtgattgtctt 26211417  T
Q  218 gaaagacattgagcacgttccc 239  Q
      ||||||||||||||||||||    
T  26211418 agaagacattgagcacgttccc 26211439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 27434099 - 27434164
Alignment:
Q  62 atgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccagcaacattctt 127  Q
    ||||||||||| |||| ||||||||||||||| ||  | ||||||||||| |||| ||||||||||    
T  27434099 atgtctattattatgttcttcaactcatcacagttcttaattgtcaaagtttccaacaacattctt 27434164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 26181613 - 26181657
Alignment:
Q  118 caacattcttcgagcaatggataggatgaatactgatttcatctt 162  Q
    |||||||||| ||| |||||||||||| ||||| |||||||||||    
T  26181613 caacattcttagaggaatggataggatcaatacagatttcatctt 26181657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 28491328 - 28491364
Alignment:
Q  203 atatgtgatggtattgaaagacattgagcacgttccc 239  Q
    ||||||||| || ||||||||||||||||||||||||    
T  28491328 atatgtgattgtcttgaaagacattgagcacgttccc 28491364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 24726 - 24550
Alignment:
Q  63 tgtctattatgatgtgcttcaactcatcacacttactgattgtcaaagtctccagcaacattcttcgagcaatggataggatgaatactgatttcatctt 162  Q
    |||||| ||| |||| ||| ||||||||||| ||  | ||||||||||| |||| ||||||| || | | ||| |||||||| || |||||||| |||||    
T  24726 tgtctaatattatgttctttaactcatcacagttcttaattgtcaaagtttccaacaacatttttggtgtaattgataggataaacactgattttatctt 24627  T
Q  163 cgaaatattcttcagtctaatctctttaatattgcacaagatatgtgatggtattgaaagacattgagcacgttccc 239  Q
    | ||||||    || |  ||||||||||||||||||||   | | |||| |||||| |||||||||| |||||||||    
T  24626 caaaatatgacacaatacaatctctttaatattgcacattctgtatgattgtattggaagacattgaacacgttccc 24550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 70977 - 71031
Alignment:
Q  182 atctctttaatattgcacaagatatgtgatggtattgaaagacattgagcacgttccc 239  Q
    |||| |||||||||||||| ||||||||||    ||||||||||||||||||||||||    
T  70977 atctttttaatattgcacatgatatgtgatt---ttgaaagacattgagcacgttccc 71031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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