View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3799_high_3 (Length: 365)
Name: NF3799_high_3
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 47197791 - 47198149
Alignment:
| Q |
6 |
agaagcaaaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
105 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197791 |
agaatcaaaggtggatatgggtggagagtatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
47197890 |
T |
|
| Q |
106 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197891 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttcttacaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
47197990 |
T |
|
| Q |
206 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcact |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197991 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcact |
47198090 |
T |
|
| Q |
306 |
actcaataattataatagcattaattattaataatgaatcattttaatgcataatgcag |
364 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47198091 |
actcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcag |
47198149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 47184916 - 47185211
Alignment:
| Q |
13 |
aaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtct |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47184916 |
aaggtggatatgggtggagaatatcattggccggagcaatcattccagcagttatgcttacagtggggtctctcatagtggatgatactcccaacagtct |
47185015 |
T |
|
| Q |
113 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185016 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
47185115 |
T |
|
| Q |
213 |
aaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcactact |
308 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| |
|
|
| T |
47185116 |
aaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttgataattgccatatgtatgcaggtaactact |
47185211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University