View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3799_high_6 (Length: 292)
Name: NF3799_high_6
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 35502209 - 35502429
Alignment:
| Q |
4 |
gttttgatacgagaaacaaatacca--caccctaattttgaaaatatttacaaaacaaatagataattagaatgctaataaagataatcataataattat |
101 |
Q |
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| T |
35502209 |
gttttgatacgagaaacaaataccaaacaccctaattttgaaaatatttacaaaacaaatagataattagaatgctaataacgataatcataataattag |
35502308 |
T |
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| Q |
102 |
ggattagcgatgaataaagagaaagaaaatagtaaaataaattaggg-nnnnnnncttaattacgaaaagtttgagtgatgcatgtaatgtgaaatcgag |
200 |
Q |
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| T |
35502309 |
ggattagcgatgaataaagagaaagaaaatagtaaaataaattagggttttttttcttaattacgaaaagtttgagtgatgcatgtaatgtgaaatcgag |
35502408 |
T |
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| Q |
201 |
aaaacgaaaatggaagattct |
221 |
Q |
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| T |
35502409 |
aaaacgaaaatggaagattct |
35502429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 35502442 - 35502476
Alignment:
| Q |
246 |
ctgacagtgccgccacggccgccgagggtgatatt |
280 |
Q |
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| T |
35502442 |
ctgacagtgccgccacggccgccgagggtgatatt |
35502476 |
T |
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