View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3799_high_9 (Length: 261)
Name: NF3799_high_9
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 5872059 - 5872291
Alignment:
| Q |
14 |
catcaatagtactttctctaaccttttcactttttatattatgttgttttgagtattgaatagaaatttttggttttcttgttgaaggaggttattggac |
113 |
Q |
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| T |
5872059 |
catcaatagtactttctctaaccttttcactttttatattatgttgttttgagtattgaatagaaatttttggttttcttgttgaaggaggttattggac |
5872158 |
T |
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| Q |
114 |
ctgtattctttgcatttagagaatcctaaattgacacagtcaagcgatttcagtctattgaaaaacagtttaatttgaatgcatcgacagtgttaaaagt |
213 |
Q |
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| T |
5872159 |
ctgtattctttgcatttagagaatcctaaattgacacagtcaagcgatttcagtctattgaaaaacagtttaatttgaatgcatcgacagtgttaaaagt |
5872258 |
T |
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| Q |
214 |
tttacattgttagtccaccacaaccaaacatgt |
246 |
Q |
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| T |
5872259 |
tttacattgttagtccaccacaaccaaacatgt |
5872291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 6082787 - 6082833
Alignment:
| Q |
180 |
agtttaatttgaatgcatcgacagtgttaaaagttttacattgttag |
226 |
Q |
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| T |
6082787 |
agtttaattttcatgcatcgccagtgtgaaaagttttacattgttag |
6082833 |
T |
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