View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3799_low_11 (Length: 250)
Name: NF3799_low_11
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 39411954 - 39411882
Alignment:
| Q |
118 |
attatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccataggcttaaatatgtta |
190 |
Q |
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| T |
39411954 |
attatctctgtttcttggctttctagtctttctttctcatgtattttaaatctccataggcttaaatatgtta |
39411882 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 39410296 - 39410344
Alignment:
| Q |
192 |
ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctg |
240 |
Q |
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| T |
39410296 |
ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctg |
39410344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 39157080 - 39157210
Alignment:
| Q |
110 |
ttaacaggattatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccat-aggcttaaatatgttatataggaacatgttcata |
208 |
Q |
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| T |
39157080 |
ttaacaggattatcactatttcttggcttcataatctttctttctcttgtattttaaattatcaggaggcttaaatttgt-atgtaaaaacatgttcata |
39157178 |
T |
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| Q |
209 |
ttcacgtgtaacttgagtattaatcttctctg |
240 |
Q |
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| T |
39157179 |
ttcacatgtaacttgagcattgatcttctctg |
39157210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 39412001 - 39411950
Alignment:
| Q |
18 |
agtagtaatatttatgttagcaggtttccataaccgcatttctttacattat |
69 |
Q |
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| T |
39412001 |
agtagtagtatttatgttagcaggtttccataaccacatttctttacattat |
39411950 |
T |
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