View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3799_low_15 (Length: 237)
Name: NF3799_low_15
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 39412040 - 39412248
Alignment:
| Q |
11 |
aattctctctgtttctcactct-gccaattttcttttaacaaatgacaacttttaggggaaacaaatgtagccaatatgagttcaattccataccaagtt |
109 |
Q |
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| T |
39412040 |
aattctctctgtttctcactcttgtcaattttcttttaacaaatgacaacttttaggggaaacaaatgtaggcaatatgagttcaattccataccaagtt |
39412139 |
T |
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| Q |
110 |
accgagatataatacagtattaatcttagtatctttgtatatgtcctgcatagtttttacttatgagttatcatctaaatgtatttgaatttataaaatt |
209 |
Q |
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| T |
39412140 |
accgagatataata---tattaatcttagtatctttgtatatgtcctgcatagtttttacttatcagttatcatctaaaagtatttgaatttataaaatt |
39412236 |
T |
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| Q |
210 |
taaccaagagtt |
221 |
Q |
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||||| ||||| |
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| T |
39412237 |
aaaccaggagtt |
39412248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 39139765 - 39139651
Alignment:
| Q |
86 |
atgagttcaattccataccaagttaccgagatataatacagtattaatcttagtatctttgtatatgtcctgcatagtttttacttatgagttatcatct |
185 |
Q |
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| T |
39139765 |
atgagttccatttcgtaccaagttaccaacatctaata---tatcaatctgagtatctttgtatatatcctgcacagtttttac-------ttatcatct |
39139676 |
T |
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| Q |
186 |
aaatgtatttgaatttataaaattt |
210 |
Q |
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| T |
39139675 |
aaaagtatttgaatttataaaattt |
39139651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 39402648 - 39402717
Alignment:
| Q |
150 |
atgtcctgcatagtttttacttatgagttatcatctaaatgtatttgaatttataaaatttaaccaagagtt |
221 |
Q |
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| T |
39402648 |
atgtcctccatagtttttacttatcagttatcatctaaaagtattttgaattat--aatttaaccaagagtt |
39402717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 39471834 - 39471867
Alignment:
| Q |
177 |
ttatcatctaaatgtatttgaatttataaaattt |
210 |
Q |
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| T |
39471834 |
ttatcatctaaatgtatttgaatttttaaaattt |
39471867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 19810081 - 19809910
Alignment:
| Q |
35 |
caattttcttttaacaaatgaca--acttttaggggaaacaaa-tgtagccaat---atgagttcaattccataccaagttaccgagatataatacagta |
128 |
Q |
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| T |
19810081 |
caattttctcttaacaaatgatagaactgttaggggaaacaaaatgaagccaactacacgagttccatttcgtaccaagttaccaacatttaata---ta |
19809985 |
T |
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| Q |
129 |
ttaatcttagtatctttgtatatgtcctgcatagtttttacttatgagttatcatctaaatgtatttgaatttataaaattt |
210 |
Q |
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| T |
19809984 |
tcaatctgagtatctttgtatatatcctgcaaagtttttac-------ttatcatctaaaagtatttgaatttataaaattt |
19809910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 45343447 - 45343407
Alignment:
| Q |
127 |
tattaatcttagtatctttgtatatgtcctgcatagttttt |
167 |
Q |
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| T |
45343447 |
tattaatcatagtatctttgtatatatcctgcattgttttt |
45343407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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