View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3799_low_19 (Length: 201)
Name: NF3799_low_19
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 15284470 - 15284305
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagctttt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15284470 |
aaaaggattcatataagcaccagcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagctttt |
15284371 |
T |
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| Q |
118 |
gccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttc |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15284370 |
gccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttc |
15284305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 15262981 - 15262929
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaatt |
70 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
15262981 |
aaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
15262929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 15287445 - 15287604
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaa----tccaaattgtttagc |
113 |
Q |
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|||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| |||| ||| | |||||| || | ||| | |||||| ||||| |
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| T |
15287445 |
aaaaggattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagttacatccaacacctc-aattctaataccttcaaatttattagc |
15287543 |
T |
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| Q |
114 |
ttttgccctagcattttccacttcctctatctcaacacttcttatcttagcatccattcct |
174 |
Q |
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| T |
15287544 |
ttttgtcttggcactttccacttcttctatctcaatccttctaatctcaccatccattcct |
15287604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 15265299 - 15265357
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgtta |
76 |
Q |
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||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
15265299 |
aaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 15256774 - 15256839
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
83 |
Q |
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|||||| | |||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||| |
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| T |
15256774 |
aaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaag |
15256839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 44248090 - 44248255
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagctttt |
117 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
44248090 |
aaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagctttt |
44248189 |
T |
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| Q |
118 |
gccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttc |
183 |
Q |
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| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44248190 |
actttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttc |
44248255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 51383655 - 51383490
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagctttt |
117 |
Q |
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|
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||| |
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| T |
51383655 |
aaaaggattcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctccaaattaaatcccaattgttcagctttt |
51383556 |
T |
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| Q |
118 |
gccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttc |
183 |
Q |
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| | ||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |
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| T |
51383555 |
gacttagcatttttcacttcctctatctcaatacttcttatctcagcatccatttcttcaagtttc |
51383490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 11807008 - 11807173
Alignment:
| Q |
18 |
aaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagctttt |
117 |
Q |
| |
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|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
11807008 |
aaaaggatacctataagctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcaccttcaaatttaatccaacttgtttagatttt |
11807107 |
T |
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| Q |
118 |
gccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttc |
183 |
Q |
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|| |||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||| |
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| T |
11807108 |
tccttagcattttcagcttcctctatctccatacttcttatcttagcttccattccttcaagtttc |
11807173 |
T |
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