View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3799_low_8 (Length: 276)
Name: NF3799_low_8
Description: NF3799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3799_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 47185771 - 47186010
Alignment:
| Q |
19 |
cagtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttgtggacaaagttgggagaaaggtacttctattggaagcatgtgtaca |
118 |
Q |
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| T |
47185771 |
cagtgatcacaggaggtgtgaatgtcctctgcaccttagtgtctgtatattttgtggacaaagttgggagaagggtacttctattggaagcatgtgtaca |
47185870 |
T |
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| Q |
119 |
aatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtt |
218 |
Q |
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| T |
47185871 |
aatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtt |
47185970 |
T |
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| Q |
219 |
atggtatgcacatttgttgcatcttttgcatggtcatggg |
258 |
Q |
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| T |
47185971 |
atggtatgcacatttgttgcatcttttgcatggtcatggg |
47186010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 47198310 - 47198549
Alignment:
| Q |
19 |
cagtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttgtggacaaagttgggagaaaggtacttctattggaagcatgtgtaca |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||| || |||||||||||||||| || |
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| T |
47198310 |
cagtgatcacaggaggtgtgaatgtcctatgcactttagtgtctgtatattttgtggacaaagctgggagaagggtgctcttattggaagcatgtgtgca |
47198409 |
T |
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| Q |
119 |
aatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtt |
218 |
Q |
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| T |
47198410 |
aatgtttgtgtcccaagttgtaattggcatagtgcttggggctaaactccaagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtt |
47198509 |
T |
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| Q |
219 |
atggtatgcacatttgttgcatcttttgcatggtcatggg |
258 |
Q |
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| T |
47198510 |
atggtatgcacatttgttgcatcttttgcatggtcatggg |
47198549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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