View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_high_12 (Length: 248)
Name: NF3800_high_12
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 7278783 - 7278587
Alignment:
| Q |
36 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtgaaaaaatgggatctttgatgaatgaggatggtggcgagggtaaatgt |
135 |
Q |
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| T |
7278783 |
gaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgt |
7278684 |
T |
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| Q |
136 |
gtgaaagaagaagatcattttttgatgaaggagggggatggtgaatatgaggaaggtaacaaagtggaagctttatggaagaaggaggagatggagg |
232 |
Q |
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| T |
7278683 |
gtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggagg |
7278587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 7375056 - 7375252
Alignment:
| Q |
36 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtgaaaaaatgggatctttgatgaatgaggatggtggcgagggtaaatgt |
135 |
Q |
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| T |
7375056 |
gaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgt |
7375155 |
T |
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| Q |
136 |
gtgaaagaagaagatcattttttgatgaaggagggggatggtgaatatgaggaaggtaacaaagtggaagctttatggaagaaggaggagatggagg |
232 |
Q |
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| T |
7375156 |
gtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggagg |
7375252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7278908 - 7278788
Alignment:
| Q |
1 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtgaaaaaatgggat |
100 |
Q |
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| T |
7278908 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaag |
7278809 |
T |
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| Q |
101 |
ctttgatgaatgaggatggtg |
121 |
Q |
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| T |
7278808 |
ctttggtgaatgaggatggtg |
7278788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7374931 - 7375049
Alignment:
| Q |
1 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtgaaaaaatgggat |
100 |
Q |
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| T |
7374931 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaag |
7375030 |
T |
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| Q |
101 |
ctttgatgaatgaggatgg |
119 |
Q |
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| T |
7375031 |
ctttggtgaatgaggatgg |
7375049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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