View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_high_14 (Length: 206)
Name: NF3800_high_14
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 25277805 - 25277972
Alignment:
| Q |
24 |
cttgaatttcataagaaacaatgtgaaaatggattttaatattttgacatgctagaaaaagatgttgtgatgtggattatagattttttnnnnnnnntat |
123 |
Q |
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| T |
25277805 |
cttgaatttcataagaaacaatgtgaaaatggattttaatattttgacatgctagaaaaagatgttgtgatgtggattatagatttttt-aacaaaatat |
25277903 |
T |
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| Q |
124 |
agtacccgtagagaacatatggaagctaaatgtgaacatcgtgaagtaaaaagatgagaatttgcatct |
192 |
Q |
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| T |
25277904 |
agtacccgtagagaacatatggatgctaaatgtgaacaacgtgaagtaaaaagatgagaatttgcatct |
25277972 |
T |
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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 25306458 - 25306651
Alignment:
| Q |
5 |
agaaaattcaagagatcaacttgaatttcataagaaacaatgtgaaaatggattttaatatttt-gacatgctagaaaaagatgt-------tgtgatgt |
96 |
Q |
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| T |
25306458 |
agaaagtttaagagatcaacttgaatttcataacaaacaatgtgaaattggaattaaatatttttgacatactcgaaaaagatgtgatttgttgtgatgt |
25306557 |
T |
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| Q |
97 |
ggattatagattttttnnnnnnnntatagtacccgtagagaacatatggaagctaaatgtgaacatcgtgaagtaaaaagatgagaatttgcatct |
192 |
Q |
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| T |
25306558 |
ggataatagatttgttaacaaaa-tatagtacccgtagagaacatattgatgctacatgtgaacaccgtgaagt-aaaagatgagaatttgcatct |
25306651 |
T |
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