View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_1 (Length: 501)
Name: NF3800_low_1
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 419739 - 419382
Alignment:
| Q |
19 |
actcagcaccctaatactcaagatattcacaaatctcacaatactttggatagttctgccacaagtaattttctttattaaaatatatgtctttagttat |
118 |
Q |
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| T |
419739 |
actcagcaccctaatactcaagatattcacaaatctcacaatactttggatagttctgccacaagtaattttctttattaaaatatatgtctttagttat |
419640 |
T |
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| Q |
119 |
ctattatctttaaccatatataaataagcatgattatttatggtacgtacataatgatttttattttattttcaaggatcccctccggagtctggaactc |
218 |
Q |
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| T |
419639 |
ctattctctttaaccata----aataagcatgattatgt----tacgtacataatgatttttattttattttcaaggatcccctccggagtctggaactc |
419548 |
T |
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| Q |
219 |
aatctacatcttctgtgactgtggccgtatctccaccggattattttcgacaaaggtcgtaccaaaccccaagcccttcaacaacttcaagctcaatgtt |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419547 |
aatccacatcttctgtgactgtggccgtatctccaccggattattttcgacaaaggtcgtaccaaaccccaagcccttcaacaacttcaagctcaatgtt |
419448 |
T |
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| Q |
319 |
tttctccaccgggtagtgaacgtactcaagcaatgtgtagctattaactagtagcatgcattccag |
384 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
419447 |
tttctccaccgggtagtgaacgtactcgagcaatgtgtagctattaactagtagcatgcattccag |
419382 |
T |
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