View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3800_low_11 (Length: 281)
Name: NF3800_low_11
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 52850886 - 52850613
Alignment:
| Q |
1 |
ccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccacttcaggtatagttcctctcttcccttcctcgaaaacttcttatgcacttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850886 |
ccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccacttcaggtatagttcctctcttcccttcctcgaaaacttcttatgcacttgc |
52850787 |
T |
|
| Q |
101 |
ttactgagcattttcctctcacgggttagagacagcaggctgttcagtaattgtggcatgaaaatagtgtgaaaacttgatatatgacataaaaatagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850786 |
ttactgagcattttcctctcacgggttagagacagcaggctgttcagtaattgtggcatgaaaatagtgtgaaaacttgatatatgacataaaaatagca |
52850687 |
T |
|
| Q |
201 |
tataattgtgactttatgcaagtgtttgatgtaaagtattcaaagtgaaacaccagccattatgtttcatctca |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850686 |
tataattgtgactttatgcaagtgtttgatgtaaagcattcaaagtgaaacaccagccattatgtttcatctca |
52850613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University