View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_16 (Length: 210)
Name: NF3800_low_16
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 23240688 - 23240862
Alignment:
| Q |
10 |
taatactaattgtgatagtttcataaaaagcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgatattttcatagacaaatct |
109 |
Q |
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| T |
23240688 |
taatactaattgtgatagtttcataaaaagcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgagattttcatagacaaatct |
23240787 |
T |
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| Q |
110 |
cacgtgggatctttatgaattcagtataaaatcattcgaaaaaataaccaatggtataataaagttagaaaagca |
184 |
Q |
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| T |
23240788 |
cacgtgggatctttatgaattcagtataaaatcattcgaaaaaataaccaatggtataataaagttagaaaagca |
23240862 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 23240884 - 23240924
Alignment:
| Q |
170 |
aaagttagaaaagcactatatagtcaatttagtttagttac |
210 |
Q |
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| T |
23240884 |
aaagttagaaaagcactatatagtcaatttagtttagttac |
23240924 |
T |
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 8643796 - 8643935
Alignment:
| Q |
7 |
aattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgatattttcatagacaaa |
106 |
Q |
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| T |
8643796 |
aattaacactaattgtgatcattttatgaaatgcattcaaggtgtttgataaaatgcctaagtgaaacatccattgttttttgagattatcatagacaaa |
8643895 |
T |
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| Q |
107 |
tctcacgtgggatctttatgaattcagtataaaatcattc |
146 |
Q |
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| T |
8643896 |
tcttaagtgggatcattatgaattcagtatgaaataattc |
8643935 |
T |
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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 10479257 - 10479346
Alignment:
| Q |
81 |
tgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcg-aaaaaataaccaatggtataat |
169 |
Q |
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| T |
10479257 |
tgttttttgagattctcatagacaaatctcatgtgggatctttctgaattcagtataaaatcatttgaaaaaaataatcaatggtataat |
10479346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 16617288 - 16617334
Alignment:
| Q |
164 |
tataataaagttagaaaagcactatatagtcaatttagtttagttac |
210 |
Q |
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| T |
16617288 |
tataatcaagttagaaaagcactatatagtcaatttagtttagttac |
16617334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 25849040 - 25849085
Alignment:
| Q |
164 |
tataataaagttagaaaagcactatatagtcaatttagtttagtta |
209 |
Q |
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| T |
25849040 |
tataatcaagttataaaagcaatatatagccaatttagtttagtta |
25849085 |
T |
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