View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3800_low_17 (Length: 206)
Name: NF3800_low_17
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 25277805 - 25277972
Alignment:
| Q |
24 |
cttgaatttcataagaaacaatgtgaaaatggattttaatattttgacatgctagaaaaagatgttgtgatgtggattatagattttttnnnnnnnntat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25277805 |
cttgaatttcataagaaacaatgtgaaaatggattttaatattttgacatgctagaaaaagatgttgtgatgtggattatagatttttt-aacaaaatat |
25277903 |
T |
|
| Q |
124 |
agtacccgtagagaacatatggaagctaaatgtgaacatcgtgaagtaaaaagatgagaatttgcatct |
192 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25277904 |
agtacccgtagagaacatatggatgctaaatgtgaacaacgtgaagtaaaaagatgagaatttgcatct |
25277972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 25306458 - 25306651
Alignment:
| Q |
5 |
agaaaattcaagagatcaacttgaatttcataagaaacaatgtgaaaatggattttaatatttt-gacatgctagaaaaagatgt-------tgtgatgt |
96 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
25306458 |
agaaagtttaagagatcaacttgaatttcataacaaacaatgtgaaattggaattaaatatttttgacatactcgaaaaagatgtgatttgttgtgatgt |
25306557 |
T |
|
| Q |
97 |
ggattatagattttttnnnnnnnntatagtacccgtagagaacatatggaagctaaatgtgaacatcgtgaagtaaaaagatgagaatttgcatct |
192 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||| || |||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
25306558 |
ggataatagatttgttaacaaaa-tatagtacccgtagagaacatattgatgctacatgtgaacaccgtgaagt-aaaagatgagaatttgcatct |
25306651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University