View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_2 (Length: 464)
Name: NF3800_low_2
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 74 - 355
Target Start/End: Original strand, 24339131 - 24339411
Alignment:
| Q |
74 |
tcattttaattactcaagtttcatttttattccttttaggatgcactatttgtagttgtacgggtaaatattnnnnnnntatttatttttctctttcaca |
173 |
Q |
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| T |
24339131 |
tcattttaattactcaagtttcatttttattccttttaggatgcactatttgtagttgtacgggtaaatattaaaaaaatatttatttttctctttcaca |
24339230 |
T |
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| Q |
174 |
aaaatttattattgatacataaaagaactgtcggacaaataattagaattgagaaatatataaaaaagatgaagggttaaacaatacattaaaaacatgg |
273 |
Q |
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| T |
24339231 |
aaaatttattattgatacataaaagaactgccggacaaataattagaattgagaaatatataaaaa-gatgatgggttaaacaatacattaaaaacatgg |
24339329 |
T |
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| Q |
274 |
tatacatattaaagttaaaatttaatgttttgataaaaaatgccattgatcaatatacgaggtctgtattttagggtgccta |
355 |
Q |
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| T |
24339330 |
tatacatattaaagttaaaatttaatgttttgataaaaaatgccattgatcaatatacgaggtctgtattttagggtgccta |
24339411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24339036 - 24339096
Alignment:
| Q |
4 |
cttaccctttcatctatttaaataggcaccataactctttctccatatccatctctattct |
64 |
Q |
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| T |
24339036 |
cttaccctttcatctatttaaataggcaccataactctttctccatgtccatctctattct |
24339096 |
T |
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