View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_3 (Length: 359)
Name: NF3800_low_3
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 28535951 - 28535717
Alignment:
| Q |
17 |
cttcaaatatcgaagaattctttctttcctttcttcttctgagtaccttcctacctttatgtttggctcttcaactgctgctagttgattaccttgaatt |
116 |
Q |
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| T |
28535951 |
cttcaaatatcgaagaattctttctttcctttcttcttctgagtaccttcctacctttatgtttggttcttcaactgctgctagttgattaccttgaatt |
28535852 |
T |
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| Q |
117 |
ccctgccattaatttcaagttaacatttatttaataaaactaatcatatagtatat----acatgtctatctatatttgtatgtgattctttgatgtgta |
212 |
Q |
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| T |
28535851 |
ccctgccattaatttcaagttaacatttatttaataaaactaatcatatagtatatacatacatgtctatctatatttgtatgtgattctttgatgtcta |
28535752 |
T |
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| Q |
213 |
tgcacttctgaaatatatattttttaaacatgcagt |
248 |
Q |
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| T |
28535751 |
t-ctatatttaaatatatattttttaaacatgcagt |
28535717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 28535652 - 28535615
Alignment:
| Q |
313 |
tgaacaatttatttgcttaagatgtcaagggacctatg |
350 |
Q |
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| T |
28535652 |
tgaacaatttattttcttaagatgtcaagggacctatg |
28535615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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