View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_4 (Length: 356)
Name: NF3800_low_4
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 23240353 - 23240074
Alignment:
| Q |
1 |
taacaaataactctctagttctatttctcaataaaatattacgatgtcatgccttcttttttaccaaaatattatggcaatcctaagaacaatgatctgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23240353 |
taacaaataactctctagttctatttctcaataaaatattatgatgtcatgccttcttttttaccaaaatattatggcaatcctaagaacaatgatttgt |
23240254 |
T |
|
| Q |
101 |
aggaagaaaaaatgtctccacataccgaaaactccctataaatgatgagcaataagtcactcaccaggcactaaattcttgttgagagttataaaagcca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23240253 |
aggaagaaaaaatgcctccacataccgaaaactccctataaatgatgagcaacaagtcactcaccaggcactaaattcttgttgagagttataaaagcca |
23240154 |
T |
|
| Q |
201 |
tgtcaagaattttctccacccgagcagcatcaataccctaaaagatgtgatgttgattaatatgaaatacaatcattgtt |
280 |
Q |
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| T |
23240153 |
tgtcaagaattttctccacccgagcagcatcaataccctaaaagatgcgatgttgattaatatgaattacaatcattgtt |
23240074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 23239428 - 23239364
Alignment:
| Q |
276 |
ttgttacaatctagatggaatgcggcaagtgcattttcttgacgtacgattccaagctcatcaac |
340 |
Q |
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| T |
23239428 |
ttgttacaatctagatggaatgcggcaagtgcattttcttgacgtacgattccaagctcatcaac |
23239364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 44146006 - 44146128
Alignment:
| Q |
154 |
aagtcactcaccaggcactaaattcttgttgagagttataaaagccatgtcaagaattttctccacccgagcagcatcaataccctaaaagatgtgatgt |
253 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||| |||||||| ||||||||||||||| || |||||| |
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| T |
44146006 |
aagtcactcaccaggcactgaattcttgttgagggttatagaagccatgccaagaattttctccccccgagcaccatcaataccctaaagaatatgatgt |
44146105 |
T |
|
| Q |
254 |
tgattaatatgaaatacaatcat |
276 |
Q |
| |
|
|||||||||||||||||| |||| |
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| T |
44146106 |
tgattaatatgaaatacagtcat |
44146128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 25803808 - 25803908
Alignment:
| Q |
154 |
aagtcactcaccaggcactaaattcttgttgagagttataaaagccatgtcaagaattttctccacccgagcagcatcaataccctaaaagatgtgatgt |
253 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||| |
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| T |
25803808 |
aagtcactcaccaggcactgaattcttgttgagggttatcaaagccatgtcaagaattttctccactcgagcaccatcaataccctaaaggacgtgatgt |
25803907 |
T |
|
| Q |
254 |
t |
254 |
Q |
| |
|
| |
|
|
| T |
25803908 |
t |
25803908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 5750046 - 5750146
Alignment:
| Q |
154 |
aagtcactcaccaggcactaaattcttgttgagagttataaaagccatgtcaagaattttctccacccgagcagcatcaataccctaaaagatgtgatgt |
253 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||| |
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| T |
5750046 |
aagtcactcaccaggcactgaattcttgttgagggttatagaagccatgtcaagaattttctccacacgagcaccatcaataccctaagggacgtgatgt |
5750145 |
T |
|
| Q |
254 |
t |
254 |
Q |
| |
|
| |
|
|
| T |
5750146 |
t |
5750146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 32654356 - 32654240
Alignment:
| Q |
154 |
aagtcactcaccaggcactaaattcttgttgagagttataaaagccatgtcaagaattttctccacccgagcagcatcaataccctaaaagatgtgatgt |
253 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||| || ||||||| | |
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| T |
32654356 |
aagtcactcaccagacactaaattcttgttgccgtttataaaagccatgttgagaattttcttcacgagagcaccatcaataccctgaaggatgtga--t |
32654259 |
T |
|
| Q |
254 |
tgattaatatgaaatacaa |
272 |
Q |
| |
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||| ||||||||||||||| |
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| T |
32654258 |
tgactaatatgaaatacaa |
32654240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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