View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_7 (Length: 332)
Name: NF3800_low_7
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 52851154 - 52850863
Alignment:
| Q |
18 |
aaaagtagaagtaaactgcaacactaatttaaccgacctgagtttgaattgctgaaatgtcccctttttcccccctcaagctagctctattaaagggtag |
117 |
Q |
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| T |
52851154 |
aaaagtagaagtaaactgcaacactaatttaaccgacctgaatttaaattgctgaaatgtcccctttttccccc-tcaagctagctctattaaagggtag |
52851056 |
T |
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| Q |
118 |
acattgtgtccttccaactaagggattttatgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcggccgtgttaataaaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52851055 |
acattgtgtccttccaactaagggattttatgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcacccgtgttaataaaacc |
52850956 |
T |
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| Q |
218 |
aaccaactttgcaacaagcgcagcactttctcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52850955 |
aaccaactttgcaacaagcgcagcactttctcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtg |
52850863 |
T |
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