View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3800_low_8 (Length: 323)
Name: NF3800_low_8
Description: NF3800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3800_low_8 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 55859166 - 55858853
Alignment:
| Q |
1 |
tccttccatctattctatcttcatgtcacatgcattttgattttttctccctaacttttggagatttcaaattgctctgattggttctttttta----ta |
96 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| || |
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| T |
55859166 |
tccttccatatattctatcttcatgtcacatgcatcttgattttttctccctaacttttggaaatttcacattgctctgattggttcctttttacatata |
55859067 |
T |
|
| Q |
97 |
tatgtgtgttgtcaactttgat-atggaaccaatgactatatgcttttattattgctgttcgatttatttgtgcaggtgtgtgtgatagatgtagaaagc |
195 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
55859066 |
tatgtgtgttgtcaactttgatcatggaaccaatgactatatgcttttattattgctgttcgatttatttgtgcagggttgtgtgatagatgtagaatgc |
55858967 |
T |
|
| Q |
196 |
atacagtgaagtggtgatagatgtcagaatttggccataaaaattgcattttaatcaggtgatatatggttatgactcatgtgacaagagtgttatgcta |
295 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55858966 |
atacaatgaagtggtgatagatgtcagaatttggccataaaaattgcattttaatcaggtgatatatggttatgactcatgtgacaagagtgttctgcta |
55858867 |
T |
|
| Q |
296 |
actctttgtacctc |
309 |
Q |
| |
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| |||||||||||| |
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| T |
55858866 |
attctttgtacctc |
55858853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 1221789 - 1221710
Alignment:
| Q |
219 |
tcagaatttggccataaaaattgcattttaatcaggtgat----atatggttatgactcatgtgacaagagtgttatgct |
294 |
Q |
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||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||| |||||||||||| |||| |
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| T |
1221789 |
tcagaatttggccataatcattgcattttaatcagaagatgataatatggttatgacttatgagacaagagtgttctgct |
1221710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 29275432 - 29275745
Alignment:
| Q |
1 |
tccttccatctattctatcttcatgtcacatgcattttgattttttctccctaacttttggagatttcaaattgctctgattggttctttttta----ta |
96 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| || |
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| T |
29275432 |
tccttccatatattctatcttcatgtcacatgcatcttgattttttctccctaacttttggaaatttcacattgctctgattggttcctttttacatata |
29275531 |
T |
|
| Q |
97 |
tatgtgtgttgtcaactttgat-atggaaccaatgactatatgcttttattattgctgttcgatttatttgtgcagg-tgtgtgtgatagatgtagaaag |
194 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
29275532 |
tatgtgtgttgtcaactttgatcatggaaccaatgactatatgcttttattattgctgttcgatttatt-gtgcagggtgtgtgtgatagatgtagaaag |
29275630 |
T |
|
| Q |
195 |
catacagtgaagtggtgatagatgtcagaatttggccataaaaattgcattttaatcaggtgatatatggttatgactcatgtgacaagagtgttatgct |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29275631 |
catacaatgaagtggtgatagatgtcagaatttggccataaaaattgcattttaatcaggtgatatatggttatgactcatgtgacaagagtgttctgct |
29275730 |
T |
|
| Q |
295 |
aactctttgtacctc |
309 |
Q |
| |
|
|| |||||||||||| |
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| T |
29275731 |
aattctttgtacctc |
29275745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 3822867 - 3823032
Alignment:
| Q |
1 |
tccttccatctattctatcttcatgtcacatgcattttgattttttctccctaacttttggagatttcaaattgctctgattggttcttttttatatatg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
3822867 |
tccttccatctcttctatcttcatgtcacatgcatcctgattttttctccctaacttttggagatttcacattgctctgattggttcctttttatatatg |
3822966 |
T |
|
| Q |
101 |
tgtgttgtcaactttgat-atggaaccaatgactatatgcttttattattgctgttcgatttattt |
165 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3822967 |
tgtgttgtcaactttgttcatggaaccaatgactatatgcttttattattgttgttcgatttattt |
3823032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 3823428 - 3823476
Alignment:
| Q |
163 |
tttgtgcaggtgtgtgtgatagatgtagaaagcatacagtgaagtggtga |
212 |
Q |
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| T |
3823428 |
tttgtgcaggt-tgtgtgatagatgttgaaagcatacaatgaagtggtga |
3823476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 16750376 - 16750541
Alignment:
| Q |
1 |
tccttccatctattctatcttcatgtcacatgcattttgattttttctccctaacttttggagatttcaaattgctctgattggttcttttttatatatg |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
16750376 |
tccttccatctcttttatcttcatgtcacatgcatcttgattttttctccctaacttttggagatttcacattgctctgattggttcctttttatatatg |
16750475 |
T |
|
| Q |
101 |
tgtgttgtcaactttgat-atggaaccaatgactatatgcttttattattgctgttcgatttattt |
165 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
16750476 |
tgtgttgtcaactttgttcatggaaccaatgactatatgcttttattattgttgtttgatttattt |
16750541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46267151 - 46267082
Alignment:
| Q |
1 |
tccttccatctattctatcttcatgtcacatgcattttgattttttctccctaacttttggagatttcaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
46267151 |
tccttccatctattctatcttcatgtcacatgcatcttgattttttctccctaacttttggagatttcaa |
46267082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 16750861 - 16750909
Alignment:
| Q |
163 |
tttgtgcaggtgtgtgtgatagatgtagaaagcatacagtgaagtggtga |
212 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
16750861 |
tttgtgcaggt-tgtgtgatagatgtcgaaagcatacaatgaagtggtga |
16750909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 16750721 - 16750765
Alignment:
| Q |
101 |
tgtgttgtcaactttgat-atggaaccaatgactatatgctttta |
144 |
Q |
| |
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|||| |||||| |||||| |||||||||||||||||||||||||| |
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| T |
16750721 |
tgtgctgtcaaatttgatcatggaaccaatgactatatgctttta |
16750765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 10761 - 10684
Alignment:
| Q |
232 |
ataaaaattgcattttaatcaggtgatatatggttatgactcatgtgacaagagtgttatgctaactctttgtacctc |
309 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
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|
| T |
10761 |
ataaaacttgaattttaatcatttgatatatggttatgacttatgtgacaagagtgttctgctaattctttgtacctc |
10684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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