View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_12 (Length: 394)
Name: NF3801_high_12
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 7552392 - 7552014
Alignment:
| Q |
1 |
caacgaccatttgattaaacgacgacaaaagtactcaaacgacacaaacaagctgtgacagtgttttgtcaaattcgacaccgaatcgaggaaaaacatc |
100 |
Q |
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| T |
7552392 |
caacgaccatttgattaaacgacgacaaaagtactcaaacgacacaaacaagctgtgacagtgttttgtcaaattcgacactgaatcgaggaaaaacatc |
7552293 |
T |
|
| Q |
101 |
acttgaaaccaaccatgtcgtgttgtttatcatgctgcacatctttaacttgtggtctctgtacctctgtagcatctgggatctcacaaaaatcagctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7552292 |
acttgaaaccaaccatgtcgtgttgtttatcatgctgcacatctttaacttgtggtctctgtacctctgtagcatctgggatctcacaaaaatcagctag |
7552193 |
T |
|
| Q |
201 |
aatcggttactgttttctctttggtgcgtctcttatagtttcttggattcttagagaagttggagcaccccttttggagaaaattccatgtaagtttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7552192 |
aatcggttactgttttctctttggtgcgtctcttatagtttcttggattcttagagaagttggagcaccccttttggagaaaattccatgtaagtttatt |
7552093 |
T |
|
| Q |
301 |
tctttagctaaagatttcaacttttttactaatttttcatttgggtatgtgtgttaatgattggttaagtttgataaat |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7552092 |
tctttagctaaagatttcaacttttttactaatttttcatttgggtatgtgtgttaatgattggttaagtttgataaat |
7552014 |
T |
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