View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_13 (Length: 376)
Name: NF3801_high_13
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 24860152 - 24859976
Alignment:
| Q |
2 |
ttttggttttgttgagatttgattgattgtggagtgagtgtggccgttgataagaagctaatcaacggttgtggtggttagttgagtgatggcacggatc |
101 |
Q |
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| T |
24860152 |
ttttggttttgttgagatttgattgattgtggagtgaatgtggccgttgataagaagctaatcaacggttgtagtggttagttgagtgatggcacggatc |
24860053 |
T |
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| Q |
102 |
gtgatccgtgtgactgtgaaagaaccaatagctggataagtgtaaatgaggagataagattttttaaacaggagatg |
178 |
Q |
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| T |
24860052 |
gtgatccgtgtgactgtgaaagaaccaatagctggataagtgtaaatggggagataagattttttaaacaggagatg |
24859976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 24859978 - 24859875
Alignment:
| Q |
258 |
atgtaaaaattataataaggatcatgaatcaaagtctatgaataattgtaaatagtaaaatgattaagtaaataaaaagaagtatttgatgcgaaattaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859978 |
atgtaaaaattataataaggatcatgaatcaaagtccatgaataattgtaatcagtaaaatgattaagtaaataaaaagaagtatttgatgcgaaattaa |
24859879 |
T |
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| Q |
358 |
atta |
361 |
Q |
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|||| |
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| T |
24859878 |
atta |
24859875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 23632053 - 23632004
Alignment:
| Q |
247 |
tatagtgttatatgtaaaaattataataaggatcatgaatcaaagtctat |
296 |
Q |
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| T |
23632053 |
tatagcgttatatgtaaaaatgataataaggatcatgaatcaaagtctat |
23632004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 9396624 - 9396669
Alignment:
| Q |
247 |
tatagtgttatatgtaaaaattataataaggatcatgaatcaaagt |
292 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||||||| |
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| T |
9396624 |
tatagtgttatatgtaaaaatgataacaaggattatgaatcaaagt |
9396669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 27316193 - 27316276
Alignment:
| Q |
275 |
aggatcatgaatcaaagtctatgaataattgtaaatagtaaaatgattaagtaaataaaaagaagtatttgatgcgaaattaaa |
358 |
Q |
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||||||||||||||||||||||||| ||| || | ||||||||||| ||||||| ||||| | |||||||||||||||||| |
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| T |
27316193 |
aggatcatgaatcaaagtctatgaaggattatagacggtaaaatgattgagtaaattgaaagatgaatttgatgcgaaattaaa |
27316276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 9924343 - 9924376
Alignment:
| Q |
255 |
tatatgtaaaaattataataaggatcatgaatca |
288 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
9924343 |
tatatgtaaaaattataatgaggatcatgaatca |
9924376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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