View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_2 (Length: 612)
Name: NF3801_high_2
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 258 - 593
Target Start/End: Complemental strand, 24859978 - 24859643
Alignment:
| Q |
258 |
atgtaaaaattataataaggatcatgaatcaaagtctatgaataattgtaaatagtaaaatgattaagtaaataaaaagaagtatttgatgcgaaattaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859978 |
atgtaaaaattataataaggatcatgaatcaaagtccatgaataattgtaatcagtaaaatgattaagtaaataaaaagaagtatttgatgcgaaattaa |
24859879 |
T |
|
| Q |
358 |
attaactttgcaaagtgaacgattttggatcagtagtccatgcttatgaagatgcaagaaataaaatgagaatcatgaaatatttatataaaatttggtt |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
24859878 |
attaactttgcaaagtgaacgattttggatcagtagtccatgcttatgaagatgcaagaaataaaatgagaatcatgaaatatttatataaagtttggct |
24859779 |
T |
|
| Q |
458 |
tattgttcaagagaattggtgaatcatatagtacattatgatgcttgtttaaggttatcaccgcatcaaagatcaagtatttatatgaaagaggtctttc |
557 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
24859778 |
tattgttcaagagaattggtgaattatatagtacattatgatgcttgtttaaggttatcaccgcatcaaagatccactatttatatgaaggaggtctttc |
24859679 |
T |
|
| Q |
558 |
atgactaacttgttcttttcaagcttaaatatgtca |
593 |
Q |
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||||||||||||||||||||| | |||||||||||| |
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| T |
24859678 |
atgactaacttgttcttttcaggtttaaatatgtca |
24859643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 24860152 - 24859976
Alignment:
| Q |
2 |
ttttggttttgttgagatttgattgattgtggagtgagtgtggccgttgataagaagctaatcaacggttgtggtggttagttgagtgatggcacggatc |
101 |
Q |
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| T |
24860152 |
ttttggttttgttgagatttgattgattgtggagtgaatgtggccgttgataagaagctaatcaacggttgtagtggttagttgagtgatggcacggatc |
24860053 |
T |
|
| Q |
102 |
gtgatccgtgtgactgtgaaagaaccaatagctggataagtgtaaatgaggagataagattttttaaacaggagatg |
178 |
Q |
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| T |
24860052 |
gtgatccgtgtgactgtgaaagaaccaatagctggataagtgtaaatggggagataagattttttaaacaggagatg |
24859976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 316 - 477
Target Start/End: Complemental strand, 18900449 - 18900288
Alignment:
| Q |
316 |
aatgattaagtaaataaaaagaagtatttgatgcgaaattaaattaactttgcaaagtgaacgatttt-ggatcagtagtccatgcttatgaagatgcaa |
414 |
Q |
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||||||| | ||||| |||||| | ||||||||||||||||| ||||||| |||| ||| ||||| ||| ||||||||||||| ||||||||||||| |
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| T |
18900449 |
aatgattgattaaatgaaaagatgcatttgatgcgaaattaatctaacttttaaaagggaataatttttggaccagtagtccatgcatatgaagatgcaa |
18900350 |
T |
|
| Q |
415 |
gaaataaaatgagaatcatgaaatatttatataaaatttggtttattgttcaagagaattggt |
477 |
Q |
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|
| T |
18900349 |
-aaataaaatgagaatgataaaatatttatatacagtttggcttaatattcaagagtattggt |
18900288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 23632053 - 23631838
Alignment:
| Q |
247 |
tatagtgttatatgtaaaaattataataaggatcatgaatcaaagtctatgaataattgtaaatagtaaaatgattaagtaaataaaaagaagtatttga |
346 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||| | | ||||| |||| | ||||| |||||| | |||||| |
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| T |
23632053 |
tatagcgttatatgtaaaaatgataataaggatcatgaatcaaagtctattcaggattacatgcaataaaaggattgactaaatgaaaagacgcatttga |
23631954 |
T |
|
| Q |
347 |
tgcgaaattaaattaactttgcaaagtgaa-cgattttggatcagtagtccatgcttatgaagatgcaagaaataaaatgagaatcatgaaatatttata |
445 |
Q |
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||||||| |||| | ||| ||||| ||| | ||||| | || |||||||||| |||||||||| | ||||||||||||||||||||| || ||||| |
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| T |
23631953 |
tgcgaaactaaaattgatttacaaagcgaatggtttttgaaccaatagtccatgcatatgaagatgtga-aaataaaatgagaatcatgaattacttata |
23631855 |
T |
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| Q |
446 |
taaaatttggtttattg |
462 |
Q |
| |
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|||| |||||||||||| |
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| T |
23631854 |
taaactttggtttattg |
23631838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 9396624 - 9396669
Alignment:
| Q |
247 |
tatagtgttatatgtaaaaattataataaggatcatgaatcaaagt |
292 |
Q |
| |
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||||||||||||||||||||| |||| |||||| |||||||||||| |
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| T |
9396624 |
tatagtgttatatgtaaaaatgataacaaggattatgaatcaaagt |
9396669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 275 - 447
Target Start/End: Original strand, 27316193 - 27316366
Alignment:
| Q |
275 |
aggatcatgaatcaaagtctatgaataattgtaaatagtaaaatgattaagtaaataaaaagaagtatttgatgcgaaattaaattaactttgcaaagtg |
374 |
Q |
| |
|
||||||||||||||||||||||||| ||| || | ||||||||||| ||||||| ||||| | |||||||||||||||||| ||| ||||||||| | |
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| T |
27316193 |
aggatcatgaatcaaagtctatgaaggattatagacggtaaaatgattgagtaaattgaaagatgaatttgatgcgaaattaaactaattttgcaaagag |
27316292 |
T |
|
| Q |
375 |
aa--cgattttggatcagtagtccatgcttatgaagatgcaagaaataaaatgagaatcatgaaatatttatata |
447 |
Q |
| |
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|| | ||||||| ||||||||||| | |||||| || | ||||||||||||||||||||| |||| ||||| |
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| T |
27316293 |
aaatggtttttggaccagtagtccatacatatgaatatatga-aaataaaatgagaatcatgaattattgatata |
27316366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 480
Target Start/End: Original strand, 14603213 - 14603314
Alignment:
| Q |
380 |
ttttggatcagtagtccatgcttatgaagatgcaagaaataaaatgagaatcatgaaatatttatataaaa--tttggtttattgttcaagagaattggt |
477 |
Q |
| |
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||||||| || |||||||||| | |||| ||| || ||||||||| ||||| ||||| |||||||||| || || || |||||||||||||| |||||| |
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| T |
14603213 |
ttttggaccaatagtccatgcatctgaatatgtaa-aaataaaataagaattatgaattatttatatataaagttgggcttattgttcaagagtattggt |
14603311 |
T |
|
| Q |
478 |
gaa |
480 |
Q |
| |
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||| |
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| T |
14603312 |
gaa |
14603314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 480
Target Start/End: Complemental strand, 18785837 - 18785751
Alignment:
| Q |
395 |
ccatgcttatgaagatgcaagaaa-taaaatgagaatcatgaaatatttatataaaatttggtttattgttcaagagaattggtgaa |
480 |
Q |
| |
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|||||| ||||||||||||| ||| |||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
18785837 |
ccatgcatatgaagatgcaaaaaaataaaatgataatcataaaatatttatataaagtttgacttattgttcaagagaattggtgaa |
18785751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 576
Target Start/End: Complemental strand, 18785703 - 18785614
Alignment:
| Q |
487 |
agtacattatgatgcttgtttaaggttatcaccgcatcaaagatcaagtatttatatgaaagaggtctttcatgactaacttgttctttt |
576 |
Q |
| |
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|||||||||| || ||| |||| | ||||||||||| ||||||| | ||||| |||||| || |||||||||||||||||||||||||| |
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|
| T |
18785703 |
agtacattatcatacttaattaacgctatcaccgcattaaagatccaatatttctatgaaggaagtctttcatgactaacttgttctttt |
18785614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 9924343 - 9924376
Alignment:
| Q |
255 |
tatatgtaaaaattataataaggatcatgaatca |
288 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
9924343 |
tatatgtaaaaattataatgaggatcatgaatca |
9924376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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