View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_20 (Length: 312)
Name: NF3801_high_20
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 44230008 - 44230294
Alignment:
| Q |
10 |
gcagagatggagcagcataatttttcgggtccctcttgcctgtgtatgatttatctggaatctagaaaatttgcacctgagttaatcatggaggatcacc |
109 |
Q |
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| T |
44230008 |
gcagagatggagcggcataatttttcgggtcccttttgcctgtgtatgatttatctggaatctagaaaatttgcacttgagttaatcatggaggatcacc |
44230107 |
T |
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| Q |
110 |
tttgtagttaaaatgtaaaattatgcaaaattgtaccaagttaaccccttttatttaattttgattcggtataacatagagactggtttgtcttagtatt |
209 |
Q |
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| T |
44230108 |
tttgtagttaaaatgtaaaattatgcaaaattgtactaagttaaccccttttatttaattttgattcggtataacatagagactggtttgtcttagtatt |
44230207 |
T |
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| Q |
210 |
aaaatatcataaaccagttattttaatttaagagttgtagtgtatattttaatttaacagtttaatcatgtgaatttaagttctgtt |
296 |
Q |
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| T |
44230208 |
aaaatatcataaaccagttattttaatttaagagttgtagtgtatattttaatttaagagtttaatcatgtgtatttaagttctgtt |
44230294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 31205817 - 31205713
Alignment:
| Q |
178 |
gtataacatagagactggtttgtcttagtattaaaatatcataaaccagttattttaatttaagagttgtagtgtatattttaatttaacagtttaatca |
277 |
Q |
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| T |
31205817 |
gtataacatagatactggtttgtctcaatattaaaatatcataaaccaattattttg--------------gtgtatattttaatttaagagtttaatta |
31205732 |
T |
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| Q |
278 |
tgtgaatttaagttctgtt |
296 |
Q |
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| T |
31205731 |
tgtgaatttaagttctgtt |
31205713 |
T |
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