View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_27 (Length: 249)
Name: NF3801_high_27
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 17111027 - 17111242
Alignment:
| Q |
19 |
ctaagggtcaatggcatatgattccccttggccgtggtttctatgaatattcattctcctccgacaatgatgtgcgcacatcactcgcaatggggacaat |
118 |
Q |
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| T |
17111027 |
ctaagggtcaatggcatatgattccccttggccgtggtttctatgaatattcattctcctccgacaatgatgtgcgcacatcactcgcaatggggacaat |
17111126 |
T |
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| Q |
119 |
taatttgcagtcgggcctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggatccggcttctg |
218 |
Q |
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| T |
17111127 |
taatttgcagtcgggcctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggatccggcttctg |
17111226 |
T |
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| Q |
219 |
gacttgccacatgaat |
234 |
Q |
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|||||||||||||||| |
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| T |
17111227 |
gacttgccacatgaat |
17111242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 23869657 - 23869478
Alignment:
| Q |
29 |
atggcatatgattccccttggccgtggtttctatgaatattcattctcctccgacaatgatgtgcgcacatcactcgcaatggggacaattaatttgcag |
128 |
Q |
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| T |
23869657 |
atggcatttgatctccctcggtcgtggattctatgagttctcattctcctcaaaggacgatgtgcacacttctcttgcaatggggagagttaacttgaag |
23869558 |
T |
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| Q |
129 |
tcgggcctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggat |
208 |
Q |
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| T |
23869557 |
ctgggactattgcgtctttcccaatggtccaaggattttaataaatattctcagcgtctcacacatgcgcaggtttggat |
23869478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 17704920 - 17705136
Alignment:
| Q |
13 |
ggaagactaagggtcaatggcatatgattccccttggccgtggtttctatgaatattcattctcctccgacaatgatgtgcgcacatcactcgcaatggg |
112 |
Q |
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| T |
17704920 |
ggaaaactaagggtctgtggcatatgatatctcttggcagtggattctacgagttttcattctcctcagatgacgatctccgcgcttcacttgcaatggg |
17705019 |
T |
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| Q |
113 |
gacaattaatttgcagtcgggcctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggatccgg |
212 |
Q |
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| T |
17705020 |
gacggttaactaaaagccgagaatattgcgtctttcctaatggtccaaggattttaataaatattcttggtgtctgacacatgcgcatgtttggatacga |
17705119 |
T |
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| Q |
213 |
cttctggacttgccaca |
229 |
Q |
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| T |
17705120 |
ctgctggacttgccaca |
17705136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 28667545 - 28667639
Alignment:
| Q |
135 |
ctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggatccggcttctggacttgccaca |
229 |
Q |
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| T |
28667545 |
ctgttgaggctttctagatgggccaaggatttcaacaagtactctcagcgtctcacacatgcgcaggtttggattcaacttctggacttaccaca |
28667639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 16176901 - 16176779
Alignment:
| Q |
105 |
gcaatggggacaattaatttgcagtcgggcctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggttt |
204 |
Q |
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| T |
16176901 |
gcaatggggactgttaatcttaagtcgggcctgttgcggctctcccgttggtccaaggactttaataactactttcagcgcctcactcatgcgcatgtat |
16176802 |
T |
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| Q |
205 |
ggatccggcttctggacttgcca |
227 |
Q |
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| T |
16176801 |
ggatacgacttctagacttgcca |
16176779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 23645869 - 23645954
Alignment:
| Q |
144 |
ctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggatccggcttctggacttgccaca |
229 |
Q |
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| T |
23645869 |
ctttcccaatggtccaaggattttattaaatattctcagcgtctgacacatgcgcatgtttggatacgactactggacttgccaca |
23645954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 10327419 - 10327298
Alignment:
| Q |
87 |
gatgtgcgcacatcactcgcaatggggacaattaatttgcagtcgggcctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtc |
186 |
Q |
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||||||||||| || || | ||||| |||| |||| ||| || ||| |||||||| |||||| ||||||||| |||||||| ||||| ||||| ||| |
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| T |
10327419 |
gatgtgcgcacttctcttgaaatggagacagttaacttgaagacggaactgttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtc |
10327320 |
T |
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| Q |
187 |
tcacacatgcacaggtttggat |
208 |
Q |
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| T |
10327319 |
tgacacatgcgcaggtttggat |
10327298 |
T |
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