View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3801_high_29 (Length: 243)

Name: NF3801_high_29
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3801_high_29
NF3801_high_29
[»] chr4 (3 HSPs)
chr4 (1-226)||(43109838-43110063)
chr4 (61-113)||(17609551-17609603)
chr4 (29-74)||(8954459-8954504)
[»] chr2 (2 HSPs)
chr2 (25-140)||(24099089-24099204)
chr2 (8-75)||(13252937-13253004)
[»] chr1 (3 HSPs)
chr1 (10-140)||(41633348-41633478)
chr1 (25-127)||(10196212-10196314)
chr1 (32-101)||(45231992-45232061)
[»] chr3 (2 HSPs)
chr3 (27-140)||(34000773-34000886)
chr3 (23-74)||(33994238-33994289)
[»] chr8 (3 HSPs)
chr8 (10-97)||(12692595-12692681)
chr8 (64-96)||(21485486-21485518)
chr8 (164-218)||(41194273-41194327)
[»] chr6 (1 HSPs)
chr6 (50-124)||(18268545-18268619)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43109838 - 43110063
Alignment:
Q  1 tttagcattaaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataagga 100  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43109838 tttagctttaaaatgtctacatcattaaaccaactttcattcttaatccacttatgttacaaatttgtgtacatgaacattgaataatatactataagga 43109937  T
Q  101 atacatcaccactcaacaccataattagactttcgttgactacaatgaggtcacttatgttacttattttgaggaattgaagaggtagttgatcttttta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43109938 atacatcaccactcaacaccataattagactttcgttgactacaatgaggtcacttatgttacttattttgaagaattgaagaggtagttgatcttttta 43110037  T
Q  201 aatggtcaagtaagactttaggtaac 226  Q
    ||||||||||||||||||||||||||    
T  43110038 aatggtcaagtaagactttaggtaac 43110063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 17609551 - 17609603
Alignment:
Q  61 aaatttgtgtacatgaacattgaataatatactataaggaatacatcaccact 113  Q
    |||||| ||||||||| |||||||| ||||||||||| |||||| ||||||||    
T  17609551 aaatttatgtacatgatcattgaatcatatactataaagaatacttcaccact 17609603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 8954459 - 8954504
Alignment:
Q  29 accaactttcattcttaatccacttatgttataaatttgtgtacat 74  Q
    ||||||||| |||||| |||||||| |||||||||||| |||||||    
T  8954459 accaactttgattctttatccacttttgttataaatttctgtacat 8954504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 24099089 - 24099204
Alignment:
Q  25 ttgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaatacatcaccactcaacaccataa 124  Q
    ||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||| |||||| | ||||||||||| ||||   |||||||||||||||||||    
T  24099089 ttgaaccaactttcattcttagtccgcttttgttacaaatttatgtacatgatcattgagtgatatactataaagaatgattcaccactcaacaccataa 24099188  T
Q  125 ttagactttcgttgac 140  Q
    || ||| || ||||||    
T  24099189 ttggaccttggttgac 24099204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 13252937 - 13253004
Alignment:
Q  8 ttaaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatg 75  Q
    ||||||||| |||||| ||||||||||||||||||||  ||||||| | ||| |||| ||||| ||||    
T  13252937 ttaaaatgtttacatcgttgaaccaactttcattcttcgtccacttttattacaaatctgtgttcatg 13253004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 41633478 - 41633348
Alignment:
Q  10 aaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaatacatcac 109  Q
    ||||||| |||| | |||||||| |||| ||||||| || |||| |||||||||||||||||||||| |||||||| ||||||||||| |||    ||||    
T  41633478 aaaatgtttacacctttgaaccatcttttattcttagtcgacttctgttataaatttgtgtacatgatcattgaatgatatactataaagaacgtttcac 41633379  T
Q  110 cactcaacaccataattagactttcgttgac 140  Q
    |||||| ||||| | ||||||| ||||||||    
T  41633378 cactcagcaccacagttagactctcgttgac 41633348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 10196212 - 10196314
Alignment:
Q  25 ttgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaatacatcaccactcaacaccataa 124  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||  ||||||| ||| ||| | |  ||||  |||||||||| ||||| ||    
T  10196212 ttgaaccaactttcatttttagtccacttctgttacaaatttgtgtacatgataattgaatgatagactgtgaaaaatatctcaccactcagcaccacaa 10196311  T
Q  125 tta 127  Q
    |||    
T  10196312 tta 10196314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 45231992 - 45232061
Alignment:
Q  32 aactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaa 101  Q
    |||||||||||||| |  |||| ||||| |||||||| |||| || ||||||| ||||||| ||||||||    
T  45231992 aactttcattcttagtttacttctgttacaaatttgtttacacgatcattgaacaatatacgataaggaa 45232061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 34000886 - 34000773
Alignment:
Q  27 gaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaatacatcaccactcaacaccataatt 126  Q
    |||| |||||||||||||| || |||||||||| |||||| | | ||||| |||| || |||||||||| | |||||  |||| ||||||||||||||||    
T  34000886 gaacgaactttcattcttagtcaacttatgttacaaatttttatgcatgatcatttaacaatatactatcaagaatatttcactactcaacaccataatt 34000787  T
Q  127 agactttcgttgac 140  Q
    | ||  ||||||||    
T  34000786 ataccatcgttgac 34000773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 33994289 - 33994238
Alignment:
Q  23 cattgaaccaactttcattcttaatccacttatgttataaatttgtgtacat 74  Q
    |||||| ||||||||| |||||||||||||| | ||| ||||||||||||||    
T  33994289 cattgatccaactttctttcttaatccacttctattacaaatttgtgtacat 33994238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 12692595 - 12692681
Alignment:
Q  10 aaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataa 97  Q
    ||||||| |||| ||||||||||||||||||||||| | ||| ||||||| |||||||||| | ||| || ||||| |||||||||||    
T  12692595 aaaatgtttacaccattgaaccaactttcattcttagttcac-tatgttacaaatttgtgtgcgtgatcaatgaatgatatactataa 12692681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 21485486 - 21485518
Alignment:
Q  64 tttgtgtacatgaacattgaataatatactata 96  Q
    |||||||||||||||||||||||||||||||||    
T  21485486 tttgtgtacatgaacattgaataatatactata 21485518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 41194273 - 41194327
Alignment:
Q  164 ttattttgaggaattgaagaggtagttgatctttttaaatggtcaagtaagactt 218  Q
    |||| |||| |||||||||| ||| || ||||||||||||||| |||||||||||    
T  41194273 ttatcttgatgaattgaagatgtaatttatctttttaaatggttaagtaagactt 41194327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 18268619 - 18268545
Alignment:
Q  50 acttatgttataaatttgtgtacatgaacattgaataatatactataaggaatacatcaccactcaacaccataa 124  Q
    |||||||| | ||||||||||||||||  ||||||| ||||||||||| |||||  |||||||| |||| |||||    
T  18268619 acttatgtaacaaatttgtgtacatgattattgaatgatatactataaagaatatttcaccactaaacaacataa 18268545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University