View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3801_high_5 (Length: 516)
Name: NF3801_high_5
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_5 |
 | |
|
| [»] scaffold0653 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 248 - 477
Target Start/End: Complemental strand, 9244453 - 9244224
Alignment:
| Q |
248 |
tcaatccaatatctttttctctttctgaattcaatccaatgtacattttctattttttccgttggagggagagtgnnnnnnncacgaaagttagagaaat |
347 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9244453 |
tcaatccaatatctttttctcattctgaattcaatccaatgtacattttctattttttctgttggagggagagtgtttttttcacgaaagttagagaaat |
9244354 |
T |
|
| Q |
348 |
tacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaattaatatgttttcttgtttg |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9244353 |
tacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaattaatatgttttcttgtttg |
9244254 |
T |
|
| Q |
448 |
gattgtaggagttgaggcatgaggttatta |
477 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
9244253 |
gattctaggagttgaggcatgaggttatta |
9244224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 245 - 489
Target Start/End: Complemental strand, 9248579 - 9248331
Alignment:
| Q |
245 |
tattcaatccaatatctttttctctttctgaattcaatccaatgtacattttctattttttccgtt----ggagggagagtgnnnnnnncacgaaagtta |
340 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| || || |||||||||||| |||||||||| |
|
|
| T |
9248579 |
tattcaatccaatatttttctctctttctcaattcaatccaatgtacattttctatttattttttttgcaggagggagagtgtttttttcacgaaagttg |
9248480 |
T |
|
| Q |
341 |
gagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaattaatatgttttc |
440 |
Q |
| |
|
|||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9248479 |
gagaaattgcatcttcttatttatgttttcataaattctacatgtgagtattgaattgtttgttttttatccaaacttcatattgaattaatatgttttc |
9248380 |
T |
|
| Q |
441 |
ttgtttggattgtaggagttgaggcatgaggttattactagttttgtat |
489 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| || | ||||||| |
|
|
| T |
9248379 |
ttgtttggattctaggagttgaggcctgaggttattgcttgctttgtat |
9248331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 9248841 - 9248706
Alignment:
| Q |
2 |
gcgtgtgactgaaagtatcccaatggcactgatgacg-tcagttggtggttggccttaagggcctgagagcactaccaccaaccatccatctacatcgta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||| |||| | |||||||||||| |
|
|
| T |
9248841 |
gcgtgtgactgaaaatatcccaatggcactaatgacggtcagttggttgttggccttaagggcccgagagcactaccactaaccttggatctacatcgta |
9248742 |
T |
|
| Q |
101 |
tataattggttttgatttaaatggagtgagagagag |
136 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9248741 |
tataattggttttgatttaaatggagagagagagag |
9248706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 9244625 - 9244493
Alignment:
| Q |
2 |
gcgtgtgactgaaagtatcccaatggcactgatgacg-tcagttggtggttggccttaagggcctgagagcactaccaccaaccatccatctacatcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||| | || ||||||||| |
|
|
| T |
9244625 |
gcgtgtgactgaaagtatcccaatggcactaatgacggtcagttggtggttggccttaagggcccgagagcactaccaataaccttggatatacatcgta |
9244526 |
T |
|
| Q |
101 |
tataattggttttgatttaaatggagtgagaga |
133 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |
|
|
| T |
9244525 |
tataattggttttcatttaaatggagagagaga |
9244493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 9248688 - 9248641
Alignment:
| Q |
136 |
gttttcttggcaccttgaaatttacatgtttcttaaatttagctttag |
183 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9248688 |
gttttgttggcacccagaaatttacatgtttcttaaatttagctttag |
9248641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 247 - 477
Target Start/End: Original strand, 5311 - 5541
Alignment:
| Q |
247 |
ttcaatccaatatctttttctctttctgaattcaatccaatgtacattttctattttttccgttggagggagagtgnnnnnnncacgaaagttagagaaa |
346 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
5311 |
ttcaatccaata-ctttttctcattctgaattcaatccaatgtacattttctattttttctgttggagggagagtgtttttttcacgaaagttagagaaa |
5409 |
T |
|
| Q |
347 |
ttacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtg-ttttatccaaacttgatattgaattaatatgttttcttgtt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5410 |
ttacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgtttttatccaaacttgatattgaattaatatgttttcttgtt |
5509 |
T |
|
| Q |
446 |
tggattgtaggagttgaggcatgaggttatta |
477 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
5510 |
tggattctaggagttgaggcatgaggttatta |
5541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 5136 - 5268
Alignment:
| Q |
2 |
gcgtgtgactgaaagtatcccaatggcactgatgacg-tcagttggtggttggccttaagggcctgagagcactaccaccaaccatccatctacatcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||| | || ||||||||| |
|
|
| T |
5136 |
gcgtgtgactgaaagtatcccaatggcactaatgacggtcagttggtggttggccttaagggcccgagagcactaccaataaccttggatatacatcgta |
5235 |
T |
|
| Q |
101 |
tataattggttttgatttaaatggagtgagaga |
133 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |
|
|
| T |
5236 |
tataattggttttcatttaaatggagagagaga |
5268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University