View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_7 (Length: 475)
Name: NF3801_high_7
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 56 - 386
Target Start/End: Complemental strand, 3640585 - 3640257
Alignment:
| Q |
56 |
caagttaatcacttaaacacaacaatacttttgaaataaaaattatgtcaaaaattacaacaagtttaacctgtgttcaccaacaattaaagagactaat |
155 |
Q |
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| T |
3640585 |
caagttaatcacttaaacacaacaatacttttgaaataaaaattatgtcaaaaattacaacaagtttaacctgtgttcaccaacaattaaagagactaat |
3640486 |
T |
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| Q |
156 |
ctaccgaccatataggaaaataacaatccaggaattataaaagaatggtatttaaatcggtnnnnnnnggttggtctttaaataaagctaaaaatataat |
255 |
Q |
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| T |
3640485 |
ctaccgaccatataggaaaataacaatccaggaattataaaagaatggtatttaaatcagtaaaaaaaggttggtctttaaataaagctaaaaatataat |
3640386 |
T |
|
| Q |
256 |
attgttgacaattctatgttgtatgtaccaagtaagaaaaagtgtagttacnnnnnnnnnnnnnntctcccaaaaatactccggtcttaaaatatacatt |
355 |
Q |
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| T |
3640385 |
attgttgacaattctatgttgtatgtaccaagtaagaaaaagtgtagttac--aaaaaaaaaaaatctcccaaaaatactctggtcttaaaatatacatt |
3640288 |
T |
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| Q |
356 |
gatctcccctaaatcctcattatatagacaa |
386 |
Q |
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| T |
3640287 |
gatctcccctaaatcctcatcatatagacaa |
3640257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 458
Target Start/End: Complemental strand, 3640086 - 3640004
Alignment:
| Q |
376 |
tatatagacaaacacctcccttcttctttaatataacttgtttcttggttaaaacacaattactgcactaaaaaattgcaaca |
458 |
Q |
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| T |
3640086 |
tatatagacaaacacctcccttcttctttaatataacttgtttcttggttaaaatacaattactgcactaaaaaattgcaaca |
3640004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 22461998 - 22461954
Alignment:
| Q |
73 |
cacaacaatacttttgaaataaaaattatgtcaaaaattacaaca |
117 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||||||| |
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| T |
22461998 |
cacaaaaatacttttgaaatataaattatctcaaaaattacaaca |
22461954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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