View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_high_9 (Length: 437)
Name: NF3801_high_9
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 29671664 - 29671248
Alignment:
| Q |
17 |
aatttaatttcttccgacataaacaacatattttcatgatacgcaaaaaccataaacaacatatttcaaagtacgagaatatcactttacaaaaattgtc |
116 |
Q |
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| T |
29671664 |
aatttaatttcttccaaaacaaacaacatattttcaagatacgcaaaaaccataaacaacatatttcaaagtacaagaatatcacttttcaaaaattgtc |
29671565 |
T |
|
| Q |
117 |
ttcaaccaaattttaaacattttaaaggacgaaagcatacttaacctaacaggtctagaactt------------catatgcactttagttttctttcct |
204 |
Q |
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| T |
29671564 |
ttcaaccaaattttaaacattttaaaggacgaaaacatacttaacctaacaagtctagaacttttcattgaagctcatatgcactttagttttctttcct |
29671465 |
T |
|
| Q |
205 |
ctgcaaataattacatacatttttatttacggatttttcattagtattttactttcaataaaaatttaagtaactttcaaattccttggaaaacttatat |
304 |
Q |
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| T |
29671464 |
ccgcaaataattacatacatttttatttacggatttttcgttagtattttactttcaataaaaatttaagtaactttcaaattccttggaaaacttatat |
29671365 |
T |
|
| Q |
305 |
ttattacagaaagatagttggaatgaagaagaagagaagatattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattc |
404 |
Q |
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| T |
29671364 |
ttattacagaaagatagttggagtgaagaagaagagaaaatattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattc |
29671265 |
T |
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| Q |
405 |
caggaagaactgaaaat |
421 |
Q |
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| T |
29671264 |
caggaagaactgaaaat |
29671248 |
T |
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Back To:
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 25379405 - 25379299
Alignment:
| Q |
311 |
cagaaagatagttggaatgaagaagaagagaagatattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattccaggaa |
410 |
Q |
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|||||||||||||||| |||||||||||| | ||| | | | || |||| || |||||||| |||||||| ||||||||||||| ||||| |||| |
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| T |
25379405 |
cagaaagatagttggagtgaagaagaagaaaggatgcttattgaaactcatggcatgattggaaatcgttgggcagagatagcaaagagaattcctggaa |
25379306 |
T |
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| Q |
411 |
gaactga |
417 |
Q |
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| T |
25379305 |
gaactga |
25379299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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