View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_10 (Length: 453)
Name: NF3801_low_10
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 55066536 - 55066117
Alignment:
| Q |
11 |
cacagacacagtggctttgaattttctttacttgttgtacacgattcataaacaaatggctatcctgacaaattaatcactagcatttgatgaatatgat |
110 |
Q |
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| T |
55066536 |
cacagacacagtagctttgaattttctttacttgttgtacacgattcataaacaaatggctatcctgacaa-ttaatcactagcatttgatgaatatgat |
55066438 |
T |
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| Q |
111 |
atgattagcgaaataaatgagagagttaggacttttgatgtgacacagtcttcacatgtttcattatacttgttatatatttctcttggtcatagcaagg |
210 |
Q |
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| T |
55066437 |
atgattagcgaaacaaatgagagagttaggacttttgatgtgacacagtcttcacatgtttcattatacttgttatatatttctcttggtcatagcaagg |
55066338 |
T |
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| Q |
211 |
aatagcatttggggagcacaaattgaacactctcgacctgcattatgataaaatc-aaattgaacatataatatacaaaatttcaatgacctaaaacgat |
309 |
Q |
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| T |
55066337 |
aatagcatttggggagcacaaattgaacactgtcgacctgcattatgataaaatcaaaattgaacatataatatacaaaatttcaatgacctaaaacgat |
55066238 |
T |
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| Q |
310 |
nnnnnnnnnnnnntcatgaccaaacgcctagcatgatgtggtgtgttcctcaggagtgaagttaggctccgatccttgtagaatgttgtggagcttcgtg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55066237 |
----aaaaaaaaatcatgaccaaacgcctagcatgatgtggtgtgttcctcaggagtgaagttaggctccgatccttgtagaatgttgtggagcttcgtg |
55066142 |
T |
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| Q |
410 |
attcccttgtgcaatgtctccagtt |
434 |
Q |
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| T |
55066141 |
attcccttgtgcaatgtctccagtt |
55066117 |
T |
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