View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_12 (Length: 428)
Name: NF3801_low_12
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 411
Target Start/End: Complemental strand, 28094256 - 28093851
Alignment:
| Q |
5 |
tttttcgatgttcggcaaacgcagcagtcagttttctcatcaagaaacaatgtgtgaatcgttgcttaaagaacttcaggttctccctctgttgtctgtg |
104 |
Q |
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| T |
28094256 |
tttttcgatgttcggcaaacgcagcagtcagttatctcatcaagaaacaatgtgtgaatcgttgcttaaagaacttcaggttctccctctgttgtctatg |
28094157 |
T |
|
| Q |
105 |
ttgtgaagaagctcttttgtttcatctagtgttccttaatagttaaaacatcttttgtgctgctgcttcttctagagattcttaggaaaaggactaacat |
204 |
Q |
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| T |
28094156 |
ttgtgaa-aatctcttttgtttcatctaatgttccttaatagttaaaacattatttgtggtgctggttcttctagagaatcttaggaaaaggactaacat |
28094058 |
T |
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| Q |
205 |
tgtattactttgatttgatctttgtgtgttaaatgtaaggtaatatgggatgaacttggagaatcggattcgcaaaaggatgcaatgttgctcgaaatag |
304 |
Q |
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| T |
28094057 |
tgtattgctttgatttgatttttgtgtgttgtatgtaaggtaatatgggatgaactcggagaatcagattctcataaggatgcaatgttgctcgaaatag |
28093958 |
T |
|
| Q |
305 |
aacaaatgtgtctggatttgtataagaaaaaagtggacgaagctaaactgcataaggcacaacttcagcatcaaattgctgattatgaagaagaaattgc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093957 |
aacaaatgtgtctggatttgtataagaaaaaagtggatgaagctaaactgcataaggcacaacttcagcatcaaattgctgattatgaagaagaaattgc |
28093858 |
T |
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| Q |
405 |
tggcatt |
411 |
Q |
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| T |
28093857 |
tggcatt |
28093851 |
T |
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