View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_13 (Length: 395)
Name: NF3801_low_13
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_13 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 50 - 395
Target Start/End: Complemental strand, 1744035 - 1743685
Alignment:
| Q |
50 |
ttattgagttgataaatgattaagccattacatttgttgatcattctcatcttaactttctagatcaa-----attatatcaaatatgttggtgaaagat |
144 |
Q |
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| T |
1744035 |
ttattgagtttataaatgattaagccattaaatttgttgatcattctcatcttaactttctagatcaacatttattatatcaaatatgttattgaaagat |
1743936 |
T |
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| Q |
145 |
tttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtctgcaagaaattcctttcctttacaa |
244 |
Q |
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| T |
1743935 |
tttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggagtctgtttctatggtctgcaagaaattcctttccattacaa |
1743836 |
T |
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| Q |
245 |
accgagttaaattctctctaacaatacatgattccactgttttattcctttctcggctactctcgagatttttaagtctcaaagtcatagattttagtca |
344 |
Q |
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| T |
1743835 |
accaagtgaaattttctttaacaatacatgattccactattctattcctttctcggctactctcgagatttttaaggctcaaagccatagattttagtca |
1743736 |
T |
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| Q |
345 |
cttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggtt |
395 |
Q |
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| T |
1743735 |
cttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggtt |
1743685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 120 - 393
Target Start/End: Original strand, 2006422 - 2006695
Alignment:
| Q |
120 |
tatatcaaatatgttggtgaaagattttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtc |
219 |
Q |
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| T |
2006422 |
tatatcaaatatattagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtc |
2006521 |
T |
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| Q |
220 |
tgcaagaaattcctttcctttacaaaccgagttaaattctctctaacaatacatgattccactgttttattcctttctcggctactctcgagatttttaa |
319 |
Q |
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| T |
2006522 |
tgcaagaaattcctttccattacaaaccgagttaaagcatctctaacagtacatgatcccactgttccattccttcctcggctactcttgggatttttaa |
2006621 |
T |
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| Q |
320 |
gtctcaaagtcatagattttagtcacttcaatggtgaactagaagacatccttcatcaaatttcacaatctggg |
393 |
Q |
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| T |
2006622 |
ggctcaaagtcttagattttagccacttcaatggtgaacttgaaggcttgcttcatcaagtttcacaatctggg |
2006695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 1749187 - 1749110
Alignment:
| Q |
27 |
actttcactcaaatatgattggtttattgagttgataaatgattaagccattacatttgttgatcattctcatcttaac |
105 |
Q |
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| T |
1749187 |
actttcact-aaatgtggttggttcattgagctaagaaattattaagccattacatttgttgatcattctcatcttaac |
1749110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 44577538 - 44577590
Alignment:
| Q |
343 |
cacttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggtt |
395 |
Q |
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| T |
44577538 |
cacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggtt |
44577590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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