View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3801_low_16 (Length: 369)
Name: NF3801_low_16
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 37067341 - 37066981
Alignment:
| Q |
1 |
ttaaatgactctcaattatatcgtgtaatctctttgaatgagtctcaattacttcaagagaatagactcttcaaatgtccgcgacaatactttagtttac |
100 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37067341 |
ttaaattactttcagttatatcgtgtaatctctttgaatgagtctcaattacttcaagagaatagactctttaaatgtccgcgacaatactttagtttac |
37067242 |
T |
|
| Q |
101 |
caacatacaatatagcaacctaccaaaacataaatttagttaggctagtggccaaaaaagtgtctaaaacattaactgcaatagaagttacaatggcaag |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37067241 |
caacatacaatataacaacctaccaaaacataaatttagttaggctagtggccaaaaaagtgtctaaaacattaactgcaatagaaattacaatggcaag |
37067142 |
T |
|
| Q |
201 |
tttgtaatatgagtgttttaaatcataacagaaaatgttcccaaataaccaaattataaaaaatctaatgttgattggggcatcaaccttccaatgcctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37067141 |
tttgtaatatgagtgttttaaatcataacaaaaaatgttcccaaataaccaaattataaaaaatctaatgttgattggggcatcaaccttccaatgcctc |
37067042 |
T |
|
| Q |
301 |
tcccaaaattaaggctattagctacataaccaacatccctaatcttacaattagaataatc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37067041 |
tcccaaaattaaggctattagctacataactaacatccctaatcttacaattagaataatc |
37066981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University