View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_18 (Length: 346)
Name: NF3801_low_18
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 31 - 329
Target Start/End: Complemental strand, 37321061 - 37320766
Alignment:
| Q |
31 |
cagagacatttttcatagtaatagcattcttataagttcattatcggatcctcaacaagaacaacaacataaagcattcttagttcattcacatcaacca |
130 |
Q |
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| T |
37321061 |
cagagacatttttcatagtaatagcattcttataagttcattatccgatcctcaacaacaacaacaa---aaagcattcttagttcattcacatcaacca |
37320965 |
T |
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| Q |
131 |
tggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcct |
230 |
Q |
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| T |
37320964 |
tggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcct |
37320865 |
T |
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| Q |
231 |
atccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaacctagcatggtatttgt |
329 |
Q |
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| T |
37320864 |
atccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaacctagcatggtatttgt |
37320766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 105 - 329
Target Start/End: Complemental strand, 37317414 - 37317187
Alignment:
| Q |
105 |
cattcttagttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatccctt |
201 |
Q |
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| T |
37317414 |
cattctttgttcattcgcatcaaccatggcaaaatcctcaacattctccataactcttctaatttctttgaaccttactttcctctctataatatccctt |
37317315 |
T |
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| Q |
202 |
gccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgt |
301 |
Q |
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| T |
37317314 |
gccactgccactaattactatcaaaacctatccccaacaatgttgggttttcaagaagagaaattcactcaccttcacttttactttcacgacatcgtgt |
37317215 |
T |
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| Q |
302 |
caggaccaaaacctagcatggtatttgt |
329 |
Q |
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| T |
37317214 |
caggaccaaaacctagcatggtatttgt |
37317187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 110 - 327
Target Start/End: Complemental strand, 37324968 - 37324749
Alignment:
| Q |
110 |
ttagttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatcccttgccac |
206 |
Q |
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|||||||||| ||| ||||||||||||||| |||| ||| ||| || |||| ||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
37324968 |
ttagttcattaaca-caaccatggcaaaatcctcaacattccccataactcttctaatttctttgaaccttactttcctctccataatatcccttaccac |
37324870 |
T |
|
| Q |
207 |
tgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcagga |
306 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| |
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| T |
37324869 |
ggccactaattactatcaaagcctatctccaacaatgctgggttttcaagaagagaaattcactcaccttcacttttactttcatgacattgtgtcggga |
37324770 |
T |
|
| Q |
307 |
ccaaaacctagcatggtattt |
327 |
Q |
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|||||||| |||||||||||| |
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| T |
37324769 |
ccaaaaccaagcatggtattt |
37324749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 37306978 - 37306893
Alignment:
| Q |
193 |
atatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttca |
278 |
Q |
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|||||||| || || ||||| |||||||| |||||| |||| ||| | || ||||||||||||||||||||||||| |||||||| |
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| T |
37306978 |
atatccctggctacagccaccaattactacaaaagcttatctccagctttgttgggttttcaagaagagaaattcacccaccttca |
37306893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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