View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_19 (Length: 339)
Name: NF3801_low_19
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 44783167 - 44783369
Alignment:
| Q |
23 |
tcccaaaaacaaagtaaacatcaattgtcagttcaacataggttagagactttaagataaatataaatagttaagctaaaatagcttatttcttcataaa |
122 |
Q |
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| T |
44783167 |
tcccaaaaacaaagtaaacatcaattgtcagttcaacatag-ttagagactttaagataaatataaatagttaagctaaaatagcttatttcttcataaa |
44783265 |
T |
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| Q |
123 |
tttgatacccaaacaaaacaagatattactttttaacaagattctcgtatcagtttacacttgcaaaaaatttactataatattgatagatattgcttca |
222 |
Q |
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| T |
44783266 |
tttgatacccaaacaaaacaagatattactttttaacaagattctcgtatcagtttacacttgcaaaaaatttactataatattgatagatattgcttca |
44783365 |
T |
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| Q |
223 |
tcag |
226 |
Q |
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|||| |
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| T |
44783366 |
tcag |
44783369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 44783685 - 44783771
Alignment:
| Q |
235 |
ttggtaaattttttaattgctttcttttcagttttacgattcatttcatg--aacaagatgtagttgtttcatgaacaatttgtact |
319 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
44783685 |
ttggtaaaaattttaattgctttcttttcagttttacgattcatttcatgataataagatgtagttgtttcatgaataatttgtact |
44783771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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