View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3801_low_2 (Length: 618)

Name: NF3801_low_2
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3801_low_2
NF3801_low_2
[»] chr7 (5 HSPs)
chr7 (99-615)||(44002850-44003369)
chr7 (20-107)||(44003543-44003630)
chr7 (492-581)||(28105635-28105727)
chr7 (555-605)||(3799875-3799925)
chr7 (505-590)||(25061748-25061836)
[»] chr5 (2 HSPs)
chr5 (466-615)||(4177193-4177347)
chr5 (471-615)||(13288435-13288582)
[»] chr8 (1 HSPs)
chr8 (555-613)||(2546136-2546194)
[»] chr2 (1 HSPs)
chr2 (469-615)||(18482715-18482861)
[»] chr1 (2 HSPs)
chr1 (468-577)||(39080579-39080690)
chr1 (540-590)||(6333648-6333698)
[»] scaffold0606 (1 HSPs)
scaffold0606 (467-522)||(8591-8646)
[»] chr3 (1 HSPs)
chr3 (514-615)||(29843537-29843636)
[»] chr4 (1 HSPs)
chr4 (154-199)||(33560462-33560507)


Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 99 - 615
Target Start/End: Complemental strand, 44003369 - 44002850
Alignment:
Q  99 tcttcataattgttgcaatcaaacatcgttgatgcagtaatatatactcagtgtgtgtttagttctaaggtgataaaaaataattttgaataaatttatt 198  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44003369 tcttcataattgttgcaatcaaatatcgttgatgcagtaatatatactcagtgtgtgtttagttctaaggtgataaaaaataattttgaataaatttatt 44003270  T
Q  199 ttataaagttgattttagttaaaaatgagatcatgaatatgaacaaacaattctatctttctatatattttacctaaaattgatcaaacaactctg---- 294  Q
    ||||||| |||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         
T  44003269 ttataaaattgattttagttaaaaatgagat---gaatatgaacaaacaactctatctttctatatattttacctaaaattgatcaaacaactctcccat 44003173  T
Q  295 --ataaaagaatattgatcatgattccctaaaatttcgccatgaatttctttactactactataaaatacaagattggttgtgtatgcataatgtggaat 392  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44003172 taataaaagaatattgatcatgattccctaaaatttcgccatgaatttctttactactactataaaatacaagattggttgtgtatgcataacgtggaat 44003073  T
Q  393 ataatattttcctaaaatatttgacttgcaggagcactagtctagcatgccgcacaccagacccgatcttagaggagtgcaaacagctcaactaagttgg 492  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44003072 ataatattttcctaaaatatttgacttgcaagagcactagtctaccatgccgcacaccagacccgatcttagaggagtgcaaacagctcaactaagttag 44002973  T
Q  493 gcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccattcaaataacaaaaacatatgttccttctttttctttcttcggtacgc 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  44002972 gcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccattcaaataacaaaaacatattttccttcttcttctttcttcggtacgc 44002873  T
Q  593 ggttgggtttcttcatctcactc 615  Q
    |||||||||||||| ||||||||    
T  44002872 ggttgggtttcttcttctcactc 44002850  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 44003630 - 44003543
Alignment:
Q  20 tacatagtaaagattgtctcacacaccctcaatagagtgtgagcaaggttttagattgatgttgcacttgtatttcaattcttcataa 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44003630 tacatagtaaagattgtctcacactccctcaatagagtgtgagcaaggttttagattgatgttgcacttgtatttcaattcttcataa 44003543  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 581
Target Start/End: Original strand, 28105635 - 28105727
Alignment:
Q  492 ggcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccattcaaataa---caaaaacatatgttccttctttttcttt 581  Q
    ||||||||||||| | ||||||||||| |||||||||||||  | |||||||| ||||||||    ||||||| |||||||||||||||||||    
T  28105635 ggcctctaaaatgcacgggcctaaaaaaaatatagcctaattccaacaccccactcaaataaaataaaaaacacatgttccttctttttcttt 28105727  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 605
Target Start/End: Complemental strand, 3799925 - 3799875
Alignment:
Q  555 aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttctt 605  Q
    ||||||||| ||| |||||||||||||||||  |||||| |||||||||||    
T  3799925 aaaaacataggtttcttctttttctttcttcattacgcgtttgggtttctt 3799875  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 590
Target Start/End: Original strand, 25061748 - 25061836
Alignment:
Q  505 tatgggcctaaaaataatat--agcctaatatccacaccccattcaaataacaaaaaca-tatgttccttctttttctttcttcggtac 590  Q
    |||||||||||||| || ||  || ||||||||||| ||| | | |||||| ||||| | |||||| ||||||||||||||||||||||    
T  25061748 tatgggcctaaaaaaaaaattaagtctaatatccaccccctacttaaataaaaaaaaaaatatgttacttctttttctttcttcggtac 25061836  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 615
Target Start/End: Original strand, 4177193 - 4177347
Alignment:
Q  466 ggagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataatata-------gcctaatatccacaccccattcaaataacaaaa 558  Q
    |||||||||||| |||||| |||| ||| ||| |||||| ||| ||||||||| ||||||       |||||||| | || ||| | |||||||| ||||    
T  4177193 ggagtgcaaacaactcaaccaagtcgggtctccaaaatgcatgagcctaaaaaaaatataaattatagcctaatacctac-ccctactcaaataa-aaaa 4177290  T
Q  559 acatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctcactc 615  Q
    ||| ||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  4177291 acacatgatccttctttttctttcttcagtacgcgtttgtgtttcttcctctcactc 4177347  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 615
Target Start/End: Original strand, 13288435 - 13288582
Alignment:
Q  471 gcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataa----tatagcctaatatccacaccccattcaaataacaaaaacatatgt 566  Q
    |||| ||||||||| |||  || |||| ||||| ||||||||| |||||||    ||||| |||||||| || |||||||||||||| | ||| ||||||    
T  13288435 gcaagcagctcaaccaagccggacctccaaaatatatgggcctcaaaataaattttatagactaatatctac-ccccattcaaataaaataaatatatgt 13288533  T
Q  567 tccttctttttctttcttcggtacgcggttgggtttcttcatctcactc 615  Q
    || |||||||||||| |||  |||||  ||| |||||||| ||||||||    
T  13288534 tcattctttttctttattcaatacgcttttgagtttcttcttctcactc 13288582  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 555 - 613
Target Start/End: Complemental strand, 2546194 - 2546136
Alignment:
Q  555 aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctcac 613  Q
    ||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||||    
T  2546194 aaaaacatatgtttcttctttttctatcttcagtacgcgtttgggtttcttcttctcac 2546136  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 615
Target Start/End: Complemental strand, 18482861 - 18482715
Alignment:
Q  469 gtgcaaacagctcaactaagttgggcctctaaaatgtatgggccta-aaaataatatagcctaatatccacaccccattcaaataacaaaaacatatgtt 567  Q
    |||||||| ||||||   ||||||||||| |||||||||||||||| |||| |||||||||||||| |||| | | | | |||||  ||| | |||||||    
T  18482861 gtgcaaaccgctcaatcgagttgggcctccaaaatgtatgggcctaaaaaaaaatatagcctaatacccaccctcaactgaaata--aaagaaatatgtt 18482764  T
Q  568 ccttctt-tttctttcttcggtacgcggttgggtttcttcatctcactc 615  Q
    |||| || ||||||||||| ||||||  || | ||||||| ||||||||    
T  18482763 cctttttctttctttcttcagtacgcctttcgttttcttcttctcactc 18482715  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 577
Target Start/End: Complemental strand, 39080690 - 39080579
Alignment:
Q  468 agtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaa--taatatagcctaatatccacaccccattcaaataacaaaaacatatg 565  Q
    |||||||||| |||| | |||| ||||||| ||||||  ||||| ||||||  || || || |||||| |||||||||| |||||||| || || |||||    
T  39080690 agtgcaaacaactcagccaagtcgggcctccaaaatgcttgggcttaaaaaaatattagagtctaatacccacaccccactcaaataaaaataaaatatg 39080591  T
Q  566 ttccttcttttt 577  Q
    |||||| |||||    
T  39080590 ttcctttttttt 39080579  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 590
Target Start/End: Complemental strand, 6333698 - 6333648
Alignment:
Q  540 ccccattcaaataacaaaaacatatgttccttctttttctttcttcggtac 590  Q
    ||||||| |||||| ||||| ||||||| ||| ||||||||||||||||||    
T  6333698 ccccatttaaataaaaaaaatatatgttacttatttttctttcttcggtac 6333648  T

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Target: scaffold0606 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 8646 - 8591
Alignment:
Q  467 gagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataat 522  Q
    |||||||||||||||||  || ||||||||| ||||  ||||||||||||||||||    
T  8646 gagtgcaaacagctcaagcaaattgggcctccaaaagttatgggcctaaaaataat 8591  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 615
Target Start/End: Complemental strand, 29843636 - 29843537
Alignment:
Q  514 aaaaataat-atagcctaatatccacaccccattcaaataacaaaaacatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctca 612  Q
    ||||||||| |||||| ||||||||| ||||| |||||||| |||||  |||||||||||| ||||||||||  || |  | |||||||||||| |||||    
T  29843636 aaaaataattatagcccaatatccac-ccccactcaaataaaaaaaa--tatgttccttctctttctttcttaagtgcatgtttgggtttcttcttctca 29843540  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 33560462 - 33560507
Alignment:
Q  154 tgtttagttctaaggtgataaaaaataattttgaataaatttattt 199  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||    
T  33560462 tgtttagttctaaggtgacaaaaaatgattttgaatgaattaattt 33560507  T

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