View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_20 (Length: 338)
Name: NF3801_low_20
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 2113268 - 2113573
Alignment:
| Q |
14 |
agacgaattgcatcttgaaaacgcagtgaacgcttgaatcgcgagtggcagagctgttcttttgatgtataaaaccatgtcggtcgcctttagctccaca |
113 |
Q |
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| T |
2113268 |
agacgaattgcatcttgaaaacacagtgaacgcttgaatcgcgagtggtagagctgttcttttgatgtataaaaccatgtcggtcgcctttagctccaca |
2113367 |
T |
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| Q |
114 |
acaggaggctcggatttgaatccaaaaacaagaaaagctgattcccataaatgatccgagattgcatgtttgttcatttttcttactccttgaattgcag |
213 |
Q |
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| T |
2113368 |
acaggaggctcggatttgaatccaaaaacaagaaaagctgattcccataaatgatccgagattgcatggttgttcatttttcttactccttgaattgcag |
2113467 |
T |
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| Q |
214 |
cctttgcgaatttcaaaccacctgttctcttagcaaatgtttgtgtaatggaatggaaatgaagccaacatccatcatcatgtagattagtccttttcgc |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113468 |
cctttgcgaatttcaaaccacctgttctcttagaaaatgtttgtgtaatggaatggaaatgaagccaacatccatcatcatgtagattagtccttttcgc |
2113567 |
T |
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| Q |
314 |
tagtcc |
319 |
Q |
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|||||| |
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| T |
2113568 |
tagtcc |
2113573 |
T |
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