View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_21 (Length: 334)
Name: NF3801_low_21
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 13058831 - 13058525
Alignment:
| Q |
18 |
cttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaagtctgtcaagggttgtgaagtggcgttgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
13058831 |
cttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaagcctgtcaagggttgtgaagtggctttgtt |
13058732 |
T |
|
| Q |
118 |
tcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattggtttcggttgtgatattgtagacggatttctagtttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13058731 |
tcgttagttggtggtatttgcttccagattttccgcctccgtgtcagaggttcactattattggtttcggttgtgatattgtagacggatttctagtttg |
13058632 |
T |
|
| Q |
218 |
ttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtcttattgattgtccatcccacacgatatggctatcgatgtggttatgggttg |
317 |
Q |
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| T |
13058631 |
ttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtctcattgattgtccatcccacacgatctggctatcgatgtggttctgggttg |
13058532 |
T |
|
| Q |
318 |
ctctgtg |
324 |
Q |
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|| |||| |
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| T |
13058531 |
ctttgtg |
13058525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 10280758 - 10280482
Alignment:
| Q |
27 |
tacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaag-tctgtcaagggttgtgaagtggcgttgtttcgttagt |
125 |
Q |
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|||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| || |
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| T |
10280758 |
tacaagtctcagtagcatcctaaccttctctggtggtcttatagatcactgtcgactctaaggtcagtcaagggttgtgaagtggcgttgtttcgttggt |
10280659 |
T |
|
| Q |
126 |
tggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattggtttcggttgtgatattgtagacggatttctagtttgttgtttcg |
225 |
Q |
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|| |||||||||||| || || | |||||||| ||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
10280658 |
tgatggtatttgctttcaaatctgtcgcctccgtgtcgaaggttcactgtcgttggtttcagttgtgatattgtagacggatttctagtttgttgttctg |
10280559 |
T |
|
| Q |
226 |
aaacccgttagggtctgttattgtgcttgtggtgctcagtcttattgattgtccatcccacacgatatggctatcgatg |
304 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||| |||||||||||| |
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| T |
10280558 |
aaactcgttagggtctgttattgtgctcgtggtgctcagtcccattgattgaccatcc--cacgatctggctatcgatg |
10280482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 5535998 - 5535752
Alignment:
| Q |
18 |
cttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaa-gtctgtcaagggttgtgaagtggcgttgt |
116 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||| | |||||||||||| | ||||||||| ||||| ||| | |||||||| |||||| ||||| |
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| T |
5535998 |
cttccggcatacaagcctcagtagcatcctaaccttctctggtggtcttatatagcactgtcgaatctaaggtccgccaagggttacaaagtggagttgt |
5535899 |
T |
|
| Q |
117 |
ttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattggtttcggttgtgatattgtagacggatttctagttt |
216 |
Q |
| |
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|||||| ||||||||||||||||| ||||| | ||||| || | ||| ||||||| |||||||| ||||||||| |||||| | |||| |||||| |
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| T |
5535898 |
ttcgttggttggtggtatttgctttcagatatgtcgccttcgtggaggagaatcactatcgttggtttcagttgtgatactgtagatgaatttatagttt |
5535799 |
T |
|
| Q |
217 |
gttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctca |
263 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
5535798 |
gttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctca |
5535752 |
T |
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