View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_27 (Length: 263)
Name: NF3801_low_27
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 17111254 - 17111492
Alignment:
| Q |
1 |
agaatgctaatgaaatttcttgtgcaatgggcacccctctcattattgacgccgcaactcaaaaacgtac-ttttggccattacgcgcgggtgctggtgg |
99 |
Q |
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| T |
17111254 |
agaatgctaatgaaatttcttgtgcaatgggcacccctctcattattgacgccgcaactcaaaaacgtactttttggtcattacgcgcgggtgctggtgg |
17111353 |
T |
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| Q |
100 |
atatagaattttctcatca-tttgtttataagatcatggtggaaagggaaggctttgcgttccttgtcgaggtggcttacgaatgactccctaacttctg |
198 |
Q |
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| T |
17111354 |
atatagaattttctcatcattttgtttataagatcatggtggaaagggaaggctttgcgttccttgtcgaggtggct----------tccctgacttttg |
17111443 |
T |
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| Q |
199 |
cgcgcatagttagatttttggtcattaggtcgcgaattgtcgttggttg |
247 |
Q |
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| T |
17111444 |
cacgcattgttagatttttggtcattaggtcgcgaattgtcgttggttg |
17111492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 17705189 - 17705315
Alignment:
| Q |
36 |
cctctcattattgacgccgcaactcaaaaacgtacttttggccattacgcgcgggtgctggtggatatagaattttctcatc-atttgtttataagatca |
134 |
Q |
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| T |
17705189 |
cctctcatcattgatgccgcaactcagaaacgcacctttggccattatgcgcgggtgctggtggacataaacttctctcgtcggtttttttatgagatca |
17705288 |
T |
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| Q |
135 |
tggtggaaagggaaggctttgcgttcc |
161 |
Q |
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| T |
17705289 |
tggtggagagggaagggtttgctttcc |
17705315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 23869416 - 23869278
Alignment:
| Q |
24 |
gcaatgggcacccctctcattattgacgccgcaactcaaaaacgtacttttggccattacgcgcgggtgctggtggatatagaattttctca-tcatttg |
122 |
Q |
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| T |
23869416 |
gcaattggcactcctctcatcattgatatcgcaactcagaaacgcacctttggccattatgtgcgggtgctggtggatatagacttctctcattggctat |
23869317 |
T |
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| Q |
123 |
tttataagatcatggtggaaagggaaggctttgcgttcc |
161 |
Q |
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| T |
23869316 |
tttatgagatcatggtggagagggaagggtttgctttcc |
23869278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 16176727 - 16176589
Alignment:
| Q |
33 |
acccctctcattattgacgccgcaactcaaaaacgtacttttggccattacgcgcgggtgctggtggatatagaattttctcatcatttg-tttataaga |
131 |
Q |
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| T |
16176727 |
accccgctcattatggatgtcgcgactcagaaacgaacctttggccactacgtgcgggtgttggtggatatagacttctcccatcgtctgttttatgaga |
16176628 |
T |
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| Q |
132 |
tcatggtggaaagggaaggctttgcgttccttgtcgagg |
170 |
Q |
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| T |
16176627 |
tcatggtggagagggaaggctgtgagttccctgttgagg |
16176589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 25276265 - 25276204
Alignment:
| Q |
42 |
attattgacgccgcaactcaaaaacgtacttttggccattacgcgcgggtgctggtggatat |
103 |
Q |
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| T |
25276265 |
attattgacgccgaaactcagaaacgcacatttggccattacacgcaggtgctggtggatat |
25276204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 28667692 - 28667762
Alignment:
| Q |
36 |
cctctcattattgacgccgcaactcaaaaacgtacttttggccattacgcgcgggtgctggtggatataga |
106 |
Q |
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| T |
28667692 |
cctctcattatcgatgccgcaactcagaaacgcaccttcggccattacacgcgggtgctagtggacataga |
28667762 |
T |
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