View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_28 (Length: 260)
Name: NF3801_low_28
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 11650849 - 11651079
Alignment:
| Q |
11 |
cagagacttggccgaaaaacttttttctgaaataagacgaaaagttccagaaggcttggaaaacatgcacagtgacaagttgaagatgattatcaaagag |
110 |
Q |
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| T |
11650849 |
cagagacttggccgaaaaacttttttctgaaataagacgaaaagttccagaaggcttggaaaacatgcacagtgacaagttgaagatgattattaaagag |
11650948 |
T |
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| Q |
111 |
ctcttgcagagaaggaggtactgatagaaaaattgatatctatattgataaatttaaaagaaaataacaattttattataattgaatcctataaataaac |
210 |
Q |
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| T |
11650949 |
ctcttgcagagaaggaggtactgatagaaaaattgatatctatattgataaatttagaagaaaataacaatttcattataattgaatcctataaataaac |
11651048 |
T |
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| Q |
211 |
aatgcaactgacaaatacttaaaacataact |
241 |
Q |
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| T |
11651049 |
aatgtaactgacaaatacttaaaacataact |
11651079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 11628743 - 11628863
Alignment:
| Q |
11 |
cagagacttggccgaaaaacttttttctgaaataagacgaaaagttccagaaggcttggaaaacatgcacagtgacaagttgaagatgattatcaaagag |
110 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||| |||||| |||||| || ||||||||||| |||||||||||| || |
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| T |
11628743 |
cagagacttggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaaaatgattatcaaaaag |
11628842 |
T |
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| Q |
111 |
ctcttgcagagaaggaggtac |
131 |
Q |
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| T |
11628843 |
ctgttgcagagaaggaagtac |
11628863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 34439868 - 34439906
Alignment:
| Q |
147 |
tatctatattgataaatttaaaagaaaataacaatttta |
185 |
Q |
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| T |
34439868 |
tatctatattgataaatttagaagaaaacaacaatttta |
34439906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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