View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_33 (Length: 239)
Name: NF3801_low_33
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_33 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 38979104 - 38979302
Alignment:
| Q |
12 |
ggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactag |
111 |
Q |
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| T |
38979104 |
ggtctttgaattgtctcactttgtt----gtctcgttctatttttggtcaattttctttcattcggtgagtatgtcacccaattcaattatcaccactag |
38979199 |
T |
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| Q |
112 |
aagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctgtacttatggcgttcatgttgacgaacg |
211 |
Q |
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| T |
38979200 |
aagggaagataattcctaatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctgcacttatgtcgttcatgttgacggacg |
38979299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 5518816 - 5518656
Alignment:
| Q |
10 |
ttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccact |
109 |
Q |
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| T |
5518816 |
ttggtctttgaattgtctcactttgtttgtcgtctcgtcttatatttggtcagttttctttcattcagtaatgatgttctccaattctatgatcaccact |
5518717 |
T |
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| Q |
110 |
agaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtg |
174 |
Q |
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| T |
5518716 |
agaagggaaattaattccttatgggt----cgcccaaccgtaaaaccttagttaaagaggtcgtg |
5518656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 16101603 - 16101798
Alignment:
| Q |
10 |
ttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccact |
109 |
Q |
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| T |
16101603 |
ttggtctttgattggtcttactttgtttgttgtcttgtcctaattttggtcaattttctttcattcggtgaggatgtcacccaattttatgatcaccact |
16101702 |
T |
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| Q |
110 |
agaagtgaagataattccttatgggtttactg-cccaaccttaagaccctagtcaaagaggtcgtggtttggtctgtacttatggcgttcatgttga |
205 |
Q |
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| T |
16101703 |
ag-ggggaagataattccttatgggtttactgtccaaaccttaaggccctagtcaaagaggttgtggtttggtccgtacttatggcgttcatgttga |
16101798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 14655128 - 14655306
Alignment:
| Q |
10 |
ttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccact |
109 |
Q |
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| T |
14655128 |
ttggtctttgaattgttttattttgtttgttgtctcgtcctatttttggtcaattttctttcattcgatgagggtgtcacccaattctattatcaccact |
14655227 |
T |
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| Q |
110 |
agaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctgtact |
188 |
Q |
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| T |
14655228 |
agaagggaaattagtttcttatgggtttactgcccaaccttaagaccttagtcaaagagttcgtgtttcggtccgtact |
14655306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 7685246 - 7685319
Alignment:
| Q |
152 |
agaccctagtcaaagaggtcgtggtttggtctgtacttatggcgttcatgttgacgaacgtag-ttggttgtaa |
224 |
Q |
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| T |
7685246 |
agaccctagtcaaagaggtcgtggtttggtcggtacttatggtgttcatgttgacggacgtagcttggttgtaa |
7685319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 76836 - 76992
Alignment:
| Q |
10 |
ttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccact |
109 |
Q |
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| T |
76836 |
ttggtctttgatttgtctcactat-tttgtcgtcttgtcctttattcagtcaattttccttcatttagtgagggtgtcacccattaccaagatctccact |
76934 |
T |
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| Q |
110 |
agaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaaga |
167 |
Q |
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| T |
76935 |
agaagggaaattaatttcttatggatttattgcccaaccttaaaaccttagttaaaga |
76992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 9305951 - 9305879
Alignment:
| Q |
100 |
gatcaccactagaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgt |
173 |
Q |
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| T |
9305951 |
gatctccactagaagggaaattaattccttatgagtttattggccaaccttaa-accttagttaaagaggtcgt |
9305879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 31394015 - 31394047
Alignment:
| Q |
136 |
ttactgcccaaccttaagaccctagtcaaagag |
168 |
Q |
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| T |
31394015 |
ttacttcccaaccttaagaccctagtcaaagag |
31394047 |
T |
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