View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_39 (Length: 218)
Name: NF3801_low_39
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 32114441 - 32114625
Alignment:
| Q |
17 |
atgatataattgaagtagtatatattaaatttgcataattttacatcttaagaaattccacgtaatattttggtgctataaactaaatattatcttttta |
116 |
Q |
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| T |
32114441 |
atgatataattgaagtagtatatattaaatttgcataattttacatcttaagaaattccacgtaatattttggtgctataaactaaatattatcttttta |
32114540 |
T |
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| Q |
117 |
taaaatataaattattgattttttctaatgtttacaagtaaattgattttgtaccattcacaaatttgtttttctaccattgaat |
201 |
Q |
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| T |
32114541 |
taaaatataaattattgattttttctaatgtttacaggtaaattgattttgtaccattcacaaatttgtttttctaccattgaat |
32114625 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 391732 - 391778
Alignment:
| Q |
144 |
atgtttacaagtaaattgattttgtaccattcacaaatttgtttttc |
190 |
Q |
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| T |
391732 |
atgtgtacaagtaaattgatcttgtaccatacacaagtttgtttttc |
391778 |
T |
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