View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3801_low_4 (Length: 541)
Name: NF3801_low_4
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 212 - 522
Target Start/End: Original strand, 9269548 - 9269858
Alignment:
| Q |
212 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
311 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
9269548 |
tttaacaaatcaagtcaccgaatatgttattatttcataagctccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
9269647 |
T |
|
| Q |
312 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctcttatgc |
411 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
9269648 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctctcatcc |
9269747 |
T |
|
| Q |
412 |
ttcacccaaagtgacgtgcttctgcttcatataagaaagagggaggaaccatagtgtgtgttgttgtttgcgtgttagcggcaaacactttgatgaaaga |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
9269748 |
ttcacccaaagtgacgtgcttctgcttcatataagaaagagggaggaaccatagtgtgtgttgttgtttgcgtgttagcggcaaacactttcataaaaga |
9269847 |
T |
|
| Q |
512 |
atggtaacaat |
522 |
Q |
| |
|
||||||||||| |
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|
| T |
9269848 |
atggtaacaat |
9269858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 9269329 - 9269516
Alignment:
| Q |
13 |
atactccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttccctgttcaatctgatacgcaaaaattacttcttaattcaccctaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
9269329 |
atactccacacaagaaatcaaacaaagagagaaacacatgatttcatcttctttccctgttcaatctgatacgcacaacttacttctaaattcaccctaa |
9269428 |
T |
|
| Q |
113 |
ttcttcgattctacagtctccatgattacatcaattgttttaaattagatttttccattggaaaaaggtagtgaatcaaggaggattt |
200 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9269429 |
ttcttcgattctatgctctccttgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggattt |
9269516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 212 - 522
Target Start/End: Complemental strand, 10854473 - 10854166
Alignment:
| Q |
212 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
10854473 |
tttaacaaatcaagtcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
10854374 |
T |
|
| Q |
312 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctcttatgc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
10854373 |
aataagagattcatgagatatagttatcaatatgtttgtgaatatggaatatggaatattgtatgtagttagattagtttatttgcaatgtctc--atcc |
10854276 |
T |
|
| Q |
412 |
ttcacccaaagtgacgtgcttctgcttcatataagaaagagggaggaaccatagtgtgtgttgttgtttgcgtgttagcggcaaacactttgatgaaaga |
511 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| ||||||||||| | |||||| |
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| T |
10854275 |
ttcacccaaagtgatgtgcttctgcttcatatgagaaagagggagg-accatagcgtgtgttgttgtttgcgttttagcagcaaacactttcaggaaaga |
10854177 |
T |
|
| Q |
512 |
atggtaacaat |
522 |
Q |
| |
|
||||||||||| |
|
|
| T |
10854176 |
atggtaacaat |
10854166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10854692 - 10854504
Alignment:
| Q |
13 |
atactccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttccctgttcaatctgatac-gcaaaaattacttcttaattcacccta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| || |||||||| ||||||||||| |
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|
| T |
10854692 |
atactccacacaagaaatcaaacaaagagagagacacatgatttcatcttctttccttgttcaatctgatactgcacaacttacttctaaattcacccta |
10854593 |
T |
|
| Q |
112 |
attcttcgattctacagtctccatgattacatcaattgttttaaattagatttttccattggaaaaaggtagtgaatcaaggaggatttt |
201 |
Q |
| |
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|||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
10854592 |
attctttgattctaccctctccttgattacatcaattg-tttaaattagatttttccattggaagaaggtagtgaatcaaggaggatttt |
10854504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 23733683 - 23733639
Alignment:
| Q |
322 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
366 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
23733683 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23733639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 23740875 - 23740831
Alignment:
| Q |
322 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
366 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
23740875 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23740831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 23617025 - 23616982
Alignment:
| Q |
323 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
366 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
23617025 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23616982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 23648366 - 23648323
Alignment:
| Q |
323 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
366 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
23648366 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23648323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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