View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_42 (Length: 212)
Name: NF3801_low_42
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 4285183 - 4285387
Alignment:
| Q |
1 |
catttcctcgtacatgtcctttgagactcccttaaaatctagttgcaactcgtttccccaatcttcttcatctgcaactaccacaaaaatttagttttat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
4285183 |
catttcctcgtacatgtcctttgcgactcccttaaaatctagttgcaactcatctccccaatcttcttcatctgcaactgcctcaaaaatttagttttat |
4285282 |
T |
|
| Q |
101 |
tatttccaattcattg---tcttcttcttccttttcatcgaactctcccgtaaaatcaagagaatccgacactttttccaagtttgagcttgattcatat |
197 |
Q |
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|||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4285283 |
tatttccaattcatcgtcttcttcttcttccttttcatccaactctcccgtaaaatcaagagaatctgacactttttccaagtttgagcttgattcatat |
4285382 |
T |
|
| Q |
198 |
tcttc |
202 |
Q |
| |
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||||| |
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| T |
4285383 |
tcttc |
4285387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 4242115 - 4242319
Alignment:
| Q |
1 |
catttcctcgtacatgtcctttgagactcccttaaaatctagttgcaactcgtttccccaatcttcttcatctgcaactaccacaaaaatttagttttat |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4242115 |
catttcctcgtacatgtcctttgcgactcccttaaaatattgttgcaactcatttccccaatcttcttcatctgcaactacctcaaaaatttagttttat |
4242214 |
T |
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| Q |
101 |
tatttccaattcattg---tcttcttcttccttttcatcgaactctcccgtaaaatcaagagaatccgacactttttccaagtttgagcttgattcatat |
197 |
Q |
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||||| ||||| || | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
4242215 |
tattttcaatttatcgtcttcttcttcttccttttcatctaactctcccgtaaaatcaagagaatctgacacttttttcaagtttgagcttgattcatat |
4242314 |
T |
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| Q |
198 |
tcttc |
202 |
Q |
| |
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||||| |
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| T |
4242315 |
tcttc |
4242319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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