View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_5 (Length: 537)
Name: NF3801_low_5
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 38459714 - 38460055
Alignment:
| Q |
19 |
tgtctaacttcatggtccctataaacatttaagcatatcatcttaaatgaaaataagcatgaagttaatacaaactaggcagttattttcaaaagattag |
118 |
Q |
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| T |
38459714 |
tgtctaacttcatggtccctataaacatttaagcatatcatcttaaatgaaaataagcatgaagttaatacaaactaggcagttattttcaaaagaatag |
38459813 |
T |
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| Q |
119 |
aacttggtatcttgattttgaaacaatattgatatatttatgtatatggtgtacaatt-actgaaagattgttattgattagtgtaacaaggttgaaggt |
217 |
Q |
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| T |
38459814 |
aacttggtatcttgattttgaaacaatattgatatatttatgtatatggtgtacaattaattgaaaaattgctattgattagtgtaacaaggttgaaggt |
38459913 |
T |
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| Q |
218 |
tttgcaatcattctagaattgtagaataaattctttgaatttatagtttatcgagttattaagttactgtgaattgtaaacgtggttgaatggtgaatat |
317 |
Q |
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| T |
38459914 |
tttgcaatcattctagaattgtagaataaattctttgaatttatagtttatcgagttattaagttactg-----------------tgaatggtgaatat |
38459996 |
T |
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| Q |
318 |
gcaacnnnnnnnnaacggatcaggaatattagtataatcacattaggatttttgtttag |
376 |
Q |
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| T |
38459997 |
gcaacttttttttaacggatcaggaatattagtataatcacattaggatttttgtttag |
38460055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 38457940 - 38458099
Alignment:
| Q |
19 |
tgtctaacttcatggtccctataaacatttaa----gcatatcatcttaaatgaaaataagcatgaagttaatacaaactaggcagttattttcaaaaga |
114 |
Q |
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| T |
38457940 |
tgtctaactttatggttcctataaacatttaattaagcttctcaacttaaatgaaaataagcatgaatttaatggaaacttggctattattttcaaaaga |
38458039 |
T |
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| Q |
115 |
ttagaacttggtatcttgattttgaaacaatattgatatatttatgtatatggtgtacaa |
174 |
Q |
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| T |
38458040 |
atataacttgatatcttgattttgaaacaatattaatatgtttatgcatatggtgaacaa |
38458099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 38467394 - 38467466
Alignment:
| Q |
18 |
atgtctaacttcatggtccctataaacatttaagcatatcatcttaaatgaaaataagcatgaagttaataca |
90 |
Q |
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| T |
38467394 |
atgtctaacttcatgatccctttaaacctgtactcttttcatcttaagtgaaaataagcaagaagctaataca |
38467466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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