View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3801_low_8 (Length: 481)
Name: NF3801_low_8
Description: NF3801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3801_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 42929108 - 42929572
Alignment:
| Q |
1 |
tattcatcttcttcttcatcatggccatggccatattgtcaccaaccaaaaacactctcttttagagctgataacatcaacaaagatgacactttcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929108 |
tattcatcttcttcttcatcatggccatggccatattgtcaccaaccaaaaacactctcttttagagctgataacatcaacaaagatgacactttcaaaa |
42929207 |
T |
|
| Q |
101 |
ccattaactcagtttacttggacgcttctgaatccttctccactgtttctccaaactgtgattctagcttttcaaaagcttctaatgatcaagaatccaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929208 |
ccattaactcagtttacttggatgcttctgaatccttctccactgtttctccaaactgtgattctagcttttcaaaagcttctaatgatcaagaatccaa |
42929307 |
T |
|
| Q |
201 |
acaagttgattcgatcgaaactgtgattcgtggattatcttctgatcggtttttctttgagccagatgagaccaactccattttagaggttaataataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42929308 |
acaagttgattcgatcgaaactgtgattcgtggattatcttctgatcggtttttctttgagccagatgagaccaactccatcttagaggttaataataaa |
42929407 |
T |
|
| Q |
301 |
gctgctgcaattggaggtggtgaaactcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatccttatgtcgattttcgaaagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929408 |
gctgctgcaattggaggtggtgaaactcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatccttatgtcgattttcgaaagt |
42929507 |
T |
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| Q |
401 |
ctatggaggaaatagtagaagctcacgatgttaaagattgggaaggtcttcaagagcttttgagt |
465 |
Q |
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| T |
42929508 |
ctatggaggaaatagtagaagctcacgatgttaaagattgggaaggtcttcaagagcttttgagt |
42929572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 25531550 - 25531495
Alignment:
| Q |
13 |
tcttcatcatggccatggccatattgtcaccaaccaaaaacactctcttttagagc |
68 |
Q |
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||||| |||||| | ||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
25531550 |
tcttcttcatggtcttggccatcttgtaaccaaccaaaaacactttcttttagagc |
25531495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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